Gm8566 Pseudogene Detail

Summary

• Symbol
  Gm8566
• Name
  predicted pseudogene 8566

• Feature Type
  pseudogene
• IDs
  MGI:3647296
  NCBI Gene: 667310
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:67182603-67183067 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647296	pseudogene	Chr6:67182507-67183178 (+)
129S1/SvImJ	ENSMUSG00200013739	pseudogene	Chr6:64096060-64096524 (+)
A/J	ENSMUSG00195045611	pseudogene	Chr6:63840571-63841035 (+)
AKR/J	ENSMUSG00220045575	pseudogene	Chr6:63331798-63332262 (+)
BALB/cJ	ENSMUSG00180042707	pseudogene	Chr6:64196456-64196920 (+)
C3H/HeJ	ENSMUSG00175049726	pseudogene	Chr6:113254261-113254725 (-)
C57BL/6NJ	ENSMUSG00215043494	pseudogene	Chr6:64169433-64169897 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010006	pseudogene	Chr15:9862000-9862458 (-)
CAST/EiJ	ENSTCUG00005037776	pseudogene	Chr6:64467779-64468243 (+)
CBA/J	ENSMUSG00210046132	pseudogene	Chr6:63986086-63986550 (+)
DBA/2J	ENSMUSG00185047329	pseudogene	Chr6:64557147-64557611 (+)
FVB/NJ	ENSMUSG00205040710	pseudogene	Chr6:63984120-63984584 (+)
JF1/MsJ	ENSUMUG00000037516	pseudogene	Chr6:63904322-63904786 (+)
LP/J	ENSMUSG00230025691	pseudogene	Chr6:65679719-65680183 (+)
NOD/ShiLtJ	ENSMUSG00190040010	pseudogene	Chr6:63845894-63846358 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010024672	pseudogene	Chr6:63119270-63119734 (+)
SPRET/EiJ	ENSMSPG00010029655	pseudogene	Chr6:64968714-64969177 (+)
WSB/EiJ	ENSIUOG00005023233	pseudogene	Chr6:64638498-64638962 (+)

Homology

• Gene Tree
  Gm8566
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000047905 (Evidence)
• NCBI Gene
  667310

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000047905	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000120174	Ensembl | MGI Sequence Detail	465	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm8566:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56885	Chr6:67182489-67182507 (+)	-105 bp