Gm4988 Gene Detail

Summary

• Symbol
  Gm4988
• Name
  predicted gene 4988

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3647289
  NCBI Gene: 245440
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:60331800-60336086 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647289	protein coding gene	ChrX:60331794-60336090 (+)
129S1/SvImJ	ENSMUSG00200016061	pseudogene	ChrX:42585116-42589413 (+)
A/J	ENSMUSG00195009494	pseudogene	ChrX:46114881-46119177 (+)
AKR/J	ENSMUSG00220024610	pseudogene	ChrX:41659064-41663360 (+)
BALB/cJ	ENSMUSG00180007076	pseudogene	ChrX:42736019-42740315 (+)
C3H/HeJ	ENSMUSG00175009270	pseudogene	ChrX:46296161-46300457 (+)
C57BL/6NJ	ENSMUSG00215008104	pseudogene	ChrX:42887929-42892225 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019652	pseudogene	ChrX:44484062-44488348 (+)
CBA/J	ENSMUSG00210018756	pseudogene	ChrX:43091449-43095733 (+)
DBA/2J	ENSMUSG00185036375	pseudogene	ChrX:55377313-55381597 (+)
FVB/NJ	ENSMUSG00205009246	pseudogene	ChrX:42709810-42714105 (+)
JF1/MsJ	ENSUMUG00000027898	pseudogene	ChrX:76304288-76308552 (+)
LP/J	ENSMUSG00230019918	pseudogene	ChrX:61934178-61938474 (+)
NOD/ShiLtJ	ENSMUSG00190013769	pseudogene	ChrX:42390191-42394487 (+)
NZO/HlLtJ	ENSMUSG00225032530	pseudogene	ChrX:67179671-67183967 (+)
PWK/PhJ	ENSLUMG00010026894	pseudogene	ChrX:42239040-42243304 (+)
SPRET/EiJ	ENSMSPG00010004647	pseudogene	ChrX:44976756-44981025 (+)
WSB/EiJ	ENSIUOG00005012149	pseudogene	ChrX:43421246-43425542 (+)

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000118608 (Evidence), ENSMUSG00000121394 (Evidence)
• NCBI Gene
  245440

Representative Sequences			Length	Strain/Species
genomic	245440	NCBI Gene Model | MGI Sequence Detail	4287	C57BL/6J
transcript	NM_001362886	RefSeq | MGI Sequence Detail	1880	C57BL/6
polypeptide	NP_001349815	RefSeq | MGI Sequence Detail	437	C57BL/6

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm4988:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161103	ChrX:60331794-60331805 (+)	0 bp
Tssr161104	ChrX:60331824-60331829 (+)	27 bp