Gm5347 Gene Detail

Summary

• Symbol
  Gm5347
• Name
  predicted gene 5347

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3647274
  NCBI Gene: 384814
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:44126758-44129084 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 24.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647274	protein coding gene	Chr8:44126695-44152528 (-)
129S1/SvImJ	ENSMUSG00200008116	pseudogene	Chr8:39242582-39244908 (-)
A/J	ENSMUSG00195006082	pseudogene	Chr8:39729243-39731569 (-)
AKR/J	ENSMUSG00220005855	pseudogene	Chr8:39537266-39539592 (-)
BALB/cJ	ENSMUSG00180003348	pseudogene	Chr8:39268656-39270982 (-)
C3H/HeJ	ENSMUSG00175014931	pseudogene	Chr8:39392999-39395325 (-)
C57BL/6NJ	ENSMUSG00215009164	pseudogene	Chr8:39207159-39209485 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005860	pseudogene	Chr8:39270829-39273157 (-)
CBA/J	ENSMUSG00210012800	pseudogene	Chr8:39289080-39291406 (-)
DBA/2J	ENSMUSG00185006242	pseudogene	Chr8:45142494-45144820 (-)
FVB/NJ	ENSMUSG00205002336	pseudogene	Chr8:38430982-38433308 (-)
JF1/MsJ	ENSUMUG00000014794	pseudogene	Chr8:46843133-46845457 (-)
LP/J	ENSMUSG00230009857	pseudogene	Chr8:48835937-48838263 (-)
NOD/ShiLtJ	ENSMUSG00190016022	pseudogene	Chr8:39314862-39317188 (-)
NZO/HlLtJ	ENSMUSG00225011882	pseudogene	Chr8:52438006-52440335 (-)
PWK/PhJ	ENSLUMG00010013480	pseudogene	Chr8:39080217-39082541 (-)
SPRET/EiJ	ENSMSPG00010004606	pseudogene	Chr8:39977550-39979868 (-)
WSB/EiJ	ENSIUOG00005005934	pseudogene	Chr8:40137331-40139663 (-)

Homology

• Gene Tree
  Gm5347
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5347
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000109723 (Evidence)
• NCBI Gene
  384814

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109723	Ensembl Gene Model | MGI Sequence Detail	2327	C57BL/6J
transcript	ENSMUST00000210542	Ensembl | MGI Sequence Detail	2327	Not Applicable
polypeptide	NP_001073400	RefSeq | MGI Sequence Detail	713	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR006586 ADAM, cysteine-rich domain
  IPR018358 Disintegrin, conserved site
  IPR001762 Disintegrin domain
  IPR036436 Disintegrin domain superfamily
  IPR000742 EGF-like domain
  IPR024079 Metallopeptidase, catalytic domain superfamily
  IPR001590 Peptidase M12B, ADAM/reprolysin
  IPR002870 Peptidase M12B, propeptide
  IPR034027 Reprolysin domain, adamalysin-type

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:84749 Puente XS, et al., Human and mouse proteases: a comparative genomic approach. Nat Rev Genet. 2003 Jul;4(7):544-58