Gm5121 Pseudogene Detail

Summary

• Symbol
  Gm5121
• Name
  predicted gene 5121

• Feature Type
  pseudogene
• IDs
  MGI:3647258
  NCBI Gene: 101154638
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:57241411-57242037 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 30.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647258	pseudogene	Chr9:57241355-57242075 (+)
129S1/SvImJ	ENSMUSG00200036046	pseudogene	Chr9:54367881-54368507 (+)
A/J	ENSMUSG00195041089	pseudogene	Chr9:54066580-54067206 (+)
AKR/J	ENSMUSG00220032580	pseudogene	Chr9:54203853-54204479 (+)
BALB/cJ	ENSMUSG00180019225	pseudogene	Chr9:54180593-54181219 (+)
C3H/HeJ	ENSMUSG00175022279	pseudogene	Chr9:54193387-54194013 (+)
C57BL/6NJ	ENSMUSG00215031723	pseudogene	Chr9:54173962-54174588 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185043999	pseudogene	Chr9:54323812-54324438 (+)
FVB/NJ	ENSMUSG00205041611	pseudogene	Chr9:54630557-54631183 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230039422	pseudogene	Chr9:54567649-54568275 (+)
NOD/ShiLtJ	ENSMUSG00190046183	pseudogene	Chr9:54391818-54392444 (+)
NZO/HlLtJ	ENSMUSG00225028749	pseudogene	Chr9:54604972-54605598 (+)
PWK/PhJ	ENSLUMG00010039529	pseudogene	Chr9:54296119-54296742 (+)
SPRET/EiJ	ENSMSPG00010027762	pseudogene	Chr9:55329742-55330358 (+)
WSB/EiJ	ENSIUOG00005042677	pseudogene	Chr9:53805751-53806377 (+)

Homology

• Gene Tree
  Gm5121
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000066626 (Evidence)
• NCBI Gene
  101154638

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066626	Ensembl Gene Model | MGI Sequence Detail	627	C57BL/6J
transcript	ENSMUST00000085711	Ensembl | MGI Sequence Detail	627	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm5121:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85298	Chr9:57241349-57241360 (+)	-56 bp