Gm5951 Pseudogene Detail

Summary

• Symbol
  Gm5951
• Name
  predicted gene 5951

• Feature Type
  pseudogene
• IDs
  MGI:3647256
  NCBI Gene: 546482
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:78379110-78379613 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647256	pseudogene	Chr10:78379108-78379613 (+)
129S1/SvImJ	ENSMUSG00200050468	pseudogene	Chr10:75057241-75057744 (+)
A/J	ENSMUSG00195049645	pseudogene	Chr10:75393942-75394445 (+)
AKR/J	ENSMUSG00220048800	pseudogene	Chr10:75053611-75054114 (+)
BALB/cJ	ENSMUSG00180053005	pseudogene	Chr10:75408307-75408810 (+)
C3H/HeJ	ENSMUSG00175052907	pseudogene	Chr10:75279411-75279914 (+)
C57BL/6NJ	ENSMUSG00215053341	pseudogene	Chr10:75017177-75017680 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051731	pseudogene	Chr10:74901768-74902271 (+)
CBA/J	ENSMUSG00210050212	pseudogene	Chr10:75135535-75136038 (+)
DBA/2J	ENSMUSG00185053394	pseudogene	Chr10:75477899-75478402 (+)
FVB/NJ	ENSMUSG00205052309	pseudogene	Chr10:75169925-75170428 (+)
JF1/MsJ	ENSUMUG00000056026	pseudogene	Chr10:76640016-76640519 (+)
LP/J	ENSMUSG00230051457	pseudogene	Chr10:77247330-77247833 (+)
NOD/ShiLtJ	ENSMUSG00190052782	pseudogene	Chr10:75455301-75455804 (+)
NZO/HlLtJ	ENSMUSG00225047662	pseudogene	Chr10:81534226-81534729 (+)
PWK/PhJ	ENSLUMG00010051368	pseudogene	Chr10:75021231-75021734 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005052000	pseudogene	Chr10:75069958-75070460 (+)

Homology

• Gene Tree
  Gm5951
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5951
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000112313 (Evidence)
• NCBI Gene
  546482

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112313	Ensembl Gene Model | MGI Sequence Detail	504	C57BL/6J
transcript	ENSMUST00000220283	Ensembl | MGI Sequence Detail	504	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm5951:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94335	Chr10:78378494-78378496 (+)	-615 bp