Gm7407 Pseudogene Detail

Summary

• Symbol
  Gm7407
• Name
  predicted gene 7407

• Feature Type
  pseudogene
• IDs
  MGI:3647246
  NCBI Gene: 664922
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:4089857-4090421 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 1.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647246	pseudogene	Chr8:4089854-4090421 (-)
129S1/SvImJ	ENSMUSG00200012385	pseudogene	Chr8:908955-909522 (-)
A/J	ENSMUSG00195010392	pseudogene	Chr8:1315120-1315687 (-)
AKR/J	ENSMUSG00220011210	pseudogene	Chr8:1041680-1042247 (-)
BALB/cJ	ENSMUSG00180004699	pseudogene	Chr8:967517-968084 (-)
C3H/HeJ	ENSMUSG00175008605	pseudogene	Chr8:1080220-1080787 (-)
C57BL/6NJ	ENSMUSG00215008783	pseudogene	Chr8:994572-995139 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021803	pseudogene	Chr8:1006037-1006604 (-)
CBA/J	ENSMUSG00210011235	pseudogene	Chr8:957762-958329 (-)
DBA/2J	ENSMUSG00185004164	pseudogene	Chr8:1093814-1094381 (-)
FVB/NJ	ENSMUSG00205005574	pseudogene	Chr8:1026485-1027052 (-)
JF1/MsJ	ENSUMUG00000047803	pseudogene	Chr8:1045903-1046470 (-)
LP/J	ENSMUSG00230008218	pseudogene	Chr8:3263377-3263944 (-)
NOD/ShiLtJ	ENSMUSG00190011683	pseudogene	Chr8:1067828-1068395 (-)
NZO/HlLtJ	ENSMUSG00225020020	pseudogene	Chr8:11113715-11114282 (-)
PWK/PhJ	ENSLUMG00010011146	pseudogene	Chr8:978577-979144 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005004935	pseudogene	Chr8:992568-993135 (-)

Homology

• Gene Tree
  Gm7407
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000109255 (Evidence)
• NCBI Gene
  664922

Representative Sequences			Length	Strain/Species
genomic	664922	NCBI Gene Model | MGI Sequence Detail	565	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7407:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80238	Chr8:4090490-4090508 (-)	-78 bp