Gm6652 Pseudogene Detail

Summary

• Symbol
  Gm6652
• Name
  predicted gene 6652

• Feature Type
  pseudogene
• IDs
  MGI:3647244
  NCBI Gene: 626096
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:153495350-153496419 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 65.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647244	pseudogene	Chr1:153495215-153496473 (-)
129S1/SvImJ	ENSMUSG00200002950	pseudogene	Chr1:150936292-150937361 (-)
A/J	ENSMUSG00195013978	pseudogene	Chr1:150313845-150314914 (-)
AKR/J	ENSMUSG00220006362	pseudogene	Chr1:150122640-150123709 (-)
BALB/cJ	ENSMUSG00180035024	pseudogene	Chr1:150543506-150544575 (-)
C3H/HeJ	ENSMUSG00175003021	pseudogene	Chr1:150580362-150581431 (-)
C57BL/6NJ	ENSMUSG00215003972	pseudogene	Chr1:150478520-150479589 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012165	pseudogene	Chr7:49117473-49118536 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210033983	pseudogene	Chr1:150484127-150485196 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000023861	pseudogene	Chr1:153924456-153925525 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225006134	pseudogene	Chr1:157997166-157998235 (-)
PWK/PhJ	ENSLUMG00010029475	pseudogene	Chr1:149282584-149283653 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6652
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm6652
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000099858 (Evidence)
• NCBI Gene
  626096

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099858	Ensembl Gene Model | MGI Sequence Detail	1070	C57BL/6J
transcript	ENSMUST00000186414	Ensembl | MGI Sequence Detail	1070	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm6652:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14281	Chr1:153496473-153496482 (-)	-59 bp