Gm5279 Pseudogene Detail

Summary

• Symbol
  Gm5279
• Name
  predicted gene 5279

• Feature Type
  pseudogene
• IDs
  MGI:3647225
  NCBI Gene: 383901
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:107250280-107250990 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647225	pseudogene	Chr3:107250271-107251015 (+)
129S1/SvImJ	ENSMUSG00200035897	pseudogene	Chr3:103865099-103865843 (+)
A/J	ENSMUSG00195025592	pseudogene	Chr3:104291878-104292622 (+)
AKR/J	ENSMUSG00220034376	pseudogene	Chr3:102655807-102656551 (+)
BALB/cJ	ENSMUSG00180020533	pseudogene	Chr3:104242712-104243456 (+)
C3H/HeJ	ENSMUSG00175030853	pseudogene	Chr3:103772087-103772831 (+)
C57BL/6NJ	ENSMUSG00215030978	pseudogene	Chr3:104499902-104500646 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011446	pseudogene	Chr4:123248304-123249053 (-)
CAST/EiJ	ENSTCUG00005026855	pseudogene	Chr3:104779019-104779760 (+)
CBA/J	ENSMUSG00210008881	pseudogene	Chr3:104393980-104394724 (+)
DBA/2J	ENSMUSG00185022538	pseudogene	Chr3:104863532-104864276 (+)
FVB/NJ	ENSMUSG00205030172	pseudogene	Chr3:103427082-103427826 (+)
JF1/MsJ	ENSUMUG00000006068	pseudogene	Chr3:103832313-103833058 (+)
LP/J	ENSMUSG00230020278	pseudogene	Chr3:106778133-106778877 (+)
NOD/ShiLtJ	ENSMUSG00190036816	pseudogene	Chr3:105101310-105102054 (+)
NZO/HlLtJ	ENSMUSG00225020986	pseudogene	Chr3:109277152-109277898 (+)
PWK/PhJ	ENSLUMG00010024469	pseudogene	Chr3:103686963-103687708 (+)
SPRET/EiJ	ENSMSPG00010038594	pseudogene	Chr3:104208972-104209707 (+)
WSB/EiJ	ENSIUOG00005005096	pseudogene	Chr3:104416215-104416959 (+)

Homology

• Gene Tree
  Gm5279
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5279
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105532 (Evidence)
• NCBI Gene
  383901

Representative Sequences			Length	Strain/Species
genomic	383901	NCBI Gene Model | MGI Sequence Detail	711	C57BL/6J

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm5279:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31206	Chr3:107250206-107250211 (+)	-71 bp