Cstdc7 Pseudogene Detail

Summary

• Symbol
  Cstdc7
• Name
  cystatin domain containing 7
• Synonyms
  Gm5689

• Feature Type
  pseudogene
• IDs
  MGI:3647214
  NCBI Gene: 435561
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:42306435-42306728 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 22.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647214	pseudogene	Chr18:42306296-42306806 (+)
129S1/SvImJ	ENSMUSG00200044651	pseudogene	Chr18:39334962-39335255 (+)
A/J	ENSMUSG00195038917	pseudogene	Chr18:39487890-39488183 (+)
AKR/J	ENSMUSG00220017386	pseudogene	Chr18:39454495-39454788 (+)
BALB/cJ	ENSMUSG00180021849	pseudogene	Chr18:39933301-39933594 (+)
C3H/HeJ	ENSMUSG00175041458	pseudogene	Chr18:39434430-39434723 (+)
C57BL/6NJ	ENSMUSG00215029935	pseudogene	Chr18:39183900-39184193 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020714	protein coding gene	Chr16:33164810-33173533 (-)
CAST/EiJ	ENSTCUG00005024112	pseudogene	Chr18:39032136-39032429 (+)
CBA/J	ENSMUSG00210021643	pseudogene	Chr18:39499054-39499347 (+)
DBA/2J	ENSMUSG00185021608	pseudogene	Chr18:39407888-39408181 (+)
FVB/NJ	ENSMUSG00205032935	pseudogene	Chr18:39068706-39068999 (+)
JF1/MsJ	ENSUMUG00000047429	pseudogene	Chr18:39542250-39542543 (+)
LP/J	ENSMUSG00230028740	pseudogene	Chr18:41525490-41525783 (+)
NOD/ShiLtJ	ENSMUSG00190023026	pseudogene	Chr18:39199614-39199907 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012912	pseudogene	Chr18:39678587-39678880 (+)
SPRET/EiJ	ENSMSPG00010022452	pseudogene	Chr18:39800955-39801248 (+)
WSB/EiJ	ENSIUOG00005008222	pseudogene	Chr18:39157509-39157802 (+)

Homology

• Gene Tree
  Cstdc7
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000034339 (Evidence)
• NCBI Gene
  435561

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000034339	Ensembl Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	ENSMUST00000041389	Ensembl | MGI Sequence Detail	294	Not Applicable

Other
Accession IDs

MGI:6275079

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Cstdc7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5298	Chr18:42306382-42306388 (+)	-50 bp