Gm8996 Pseudogene Detail

Summary

• Symbol
  Gm8996
• Name
  predicted gene 8996

• Feature Type
  pseudogene
• IDs
  MGI:3647165
  NCBI Gene: 668140
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:57454690-57455099 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 30.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647165	pseudogene	Chr14:57454690-57455099 (+)
129S1/SvImJ	ENSMUSG00200042560	pseudogene	Chr14:46039887-46040296 (+)
A/J	ENSMUSG00195038047	pseudogene	Chr14:46255121-46255530 (+)
AKR/J	ENSMUSG00220032144	pseudogene	Chr14:45582074-45582483 (+)
BALB/cJ	ENSMUSG00180053719	pseudogene	Chr14:45877163-45877572 (+)
C3H/HeJ	ENSMUSG00175052658	pseudogene	Chr14:47583720-47584129 (+)
C57BL/6NJ	ENSMUSG00215051061	pseudogene	Chr14:45777827-45778236 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050340	pseudogene	Chr14:47562557-47562964 (+)
CBA/J	ENSMUSG00210046846	pseudogene	Chr14:46245534-46245943 (+)
DBA/2J	ENSMUSG00185033079	pseudogene	Chr14:51378459-51378868 (+)
FVB/NJ	ENSMUSG00205048285	pseudogene	Chr14:45647505-45647914 (+)
JF1/MsJ	ENSUMUG00000049976	pseudogene	Chr14:62548030-62548422 (+)
LP/J	ENSMUSG00230037453	pseudogene	Chr14:63408917-63409326 (+)
NOD/ShiLtJ	ENSMUSG00190051619	pseudogene	Chr14:46011849-46012258 (+)
NZO/HlLtJ	ENSMUSG00225046935	pseudogene	Chr14:53702213-53702622 (+)
PWK/PhJ	ENSLUMG00010049987	pseudogene	Chr14:45471869-45472278 (+)
SPRET/EiJ	ENSMSPG00010047778	pseudogene	Chr14:48995857-48996265 (+)
WSB/EiJ	ENSIUOG00005044295	pseudogene	Chr14:45439434-45439843 (+)

Homology

• Gene Tree
  Gm8996
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  2 involving Gm8996
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114754 (Evidence)
• NCBI Gene
  668140

Representative Sequences			Length	Strain/Species
genomic	668140	NCBI Gene Model | MGI Sequence Detail	410	C57BL/6J

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:372803 Dominguez-Ruiz M, et al., A murine model for the del(GJB6-D13S1830) deletion recapitulating the phenotype of human DFNB1 hearing impairment: generation and functional and histopathological study. BMC Genomics. 2024 Apr 11;25(1):359

TSS for Gm8996:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125866	Chr14:57454665-57454675 (+)	-20 bp