Gm6285 Pseudogene Detail

Summary

• Symbol
  Gm6285
• Name
  predicted gene 6285

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647132
  NCBI Gene: 622098
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:103991391-103991888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647132	pseudogene	ChrX:103991361-103991935 (+)
129S1/SvImJ	ENSMUSG00200038724	pseudogene	ChrX:85750561-85751058 (+)
A/J	ENSMUSG00195043612	pseudogene	ChrX:89517567-89518064 (+)
AKR/J	ENSMUSG00220041315	pseudogene	ChrX:84207411-84207908 (+)
BALB/cJ	ENSMUSG00180042342	pseudogene	ChrX:86183808-86184305 (+)
C3H/HeJ	ENSMUSG00175043753	pseudogene	ChrX:89756563-89757060 (+)
C57BL/6NJ	ENSMUSG00215046632	pseudogene	ChrX:86369614-86370111 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043346	pseudogene	ChrX:87192504-87193001 (+)
CBA/J	ENSMUSG00210045689	pseudogene	ChrX:86653297-86653794 (+)
DBA/2J	ENSMUSG00185046505	pseudogene	ChrX:99097325-99097822 (+)
FVB/NJ	ENSMUSG00205040078	pseudogene	ChrX:85732382-85732879 (+)
JF1/MsJ	ENSUMUG00000045280	pseudogene	ChrX:119696491-119696988 (+)
LP/J	ENSMUSG00230042505	pseudogene	ChrX:105784812-105785309 (+)
NOD/ShiLtJ	ENSMUSG00190040896	pseudogene	ChrX:85834168-85834665 (+)
NZO/HlLtJ	ENSMUSG00225045737	pseudogene	ChrX:110911916-110912413 (+)
PWK/PhJ	ENSLUMG00010040535	pseudogene	ChrX:84992084-84992581 (+)
SPRET/EiJ	ENSMSPG00010040721	pseudogene	ChrX:89218667-89219161 (+)
WSB/EiJ	ENSIUOG00005043993	pseudogene	ChrX:86327495-86327992 (+)

Homology

• Gene Tree
  Gm6285
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000081703 (Evidence)
• NCBI Gene
  622098

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081703	Ensembl Gene Model | MGI Sequence Detail	498	C57BL/6J
transcript	ENSMUST00000122012	Ensembl | MGI Sequence Detail	498	Not Applicable
polypeptide	XP_036018027	RefSeq | MGI Sequence Detail	114	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6285:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161741	ChrX:103991300-103991302 (+)	-90 bp