Rpl5-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl5-ps1
• Name
  ribosomal protein L5, pseudogene 1
• Synonyms
  Gm7625

• Feature Type
  pseudogene
• IDs
  MGI:3647110
  NCBI Gene: 665407
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:14935296-14936189 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 4.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647110	pseudogene	Chr1:14935242-14936243 (+)
129S1/SvImJ	ENSMUSG00200018815	pseudogene	Chr1:12323732-12324625 (+)
A/J	ENSMUSG00195027957	pseudogene	Chr1:12101508-12102401 (+)
AKR/J	ENSMUSG00220008258	pseudogene	Chr1:12181847-12182740 (+)
BALB/cJ	ENSMUSG00180027522	pseudogene	Chr1:12167852-12168745 (+)
C3H/HeJ	ENSMUSG00175000410	pseudogene	Chr1:12100821-12101714 (+)
C57BL/6NJ	ENSMUSG00215015070	pseudogene	Chr1:12137988-12138881 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011633	pseudogene	Chr5:65006768-65007652 (+)
CAST/EiJ	ENSTCUG00005022063	pseudogene	Chr1:12485251-12485259 (+)
CBA/J	ENSMUSG00210002967	pseudogene	Chr1:11966894-11967787 (+)
DBA/2J	ENSMUSG00185004078	pseudogene	Chr1:13040608-13041501 (+)
FVB/NJ	ENSMUSG00205018081	pseudogene	Chr1:12244842-12245735 (+)
JF1/MsJ	ENSUMUG00000018310	pseudogene	Chr1:12317627-12317635 (+)
LP/J	ENSMUSG00230019012	pseudogene	Chr1:13025106-13025999 (+)
NOD/ShiLtJ	ENSMUSG00190033144	pseudogene	Chr1:12074835-12075728 (+)
NZO/HlLtJ	ENSMUSG00225005391	pseudogene	Chr1:16401564-16402457 (+)
PWK/PhJ	ENSLUMG00010022207	pseudogene	Chr1:11931874-11931880 (+)
SPRET/EiJ	ENSMSPG00010028465	pseudogene	Chr1:12701989-12701997 (+)
WSB/EiJ	ENSIUOG00005011840	pseudogene	Chr1:12093157-12094050 (+)

Homology

• Gene Tree
  Rpl5-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082193 (Evidence)
• NCBI Gene
  665407

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082193	Ensembl Gene Model | MGI Sequence Detail	894	C57BL/6J
transcript	ENSMUST00000121367	Ensembl | MGI Sequence Detail	894	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rpl5-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5975	Chr1:14935222-14935232 (+)	-69 bp