Gm6089 Pseudogene Detail

Summary

• Symbol
  Gm6089
• Name
  predicted gene 6089

• Feature Type
  pseudogene
• IDs
  MGI:3647070
  NCBI Gene: 619645
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:26275535-26276472 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 12.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647070	pseudogene	Chr5:26275327-26281167 (+)
129S1/SvImJ	ENSMUSG00200014811	pseudogene	Chr5:21773875-21774814 (+)
A/J	ENSMUSG00195049147	pseudogene	Chr5:21229073-21230010 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175049983	pseudogene	Chr5:23037320-23038257 (+)
C57BL/6NJ	ENSMUSG00215042268	pseudogene	Chr5:21896036-21896975 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008992	pseudogene	Chr1:5705532-5706456 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185039928	pseudogene	Chr5:23827672-23828609 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230027183	pseudogene	Chr5:28471942-28472881 (+)
LP/J	ENSMUSG00230027137	pseudogene	Chr5:28063371-28064308 (+)
LP/J	ENSMUSG00230027162	pseudogene	Chr5:28154236-28155173 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225020382	pseudogene	Chr5:33680998-33681935 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6089
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm6089
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000105422 (Evidence)
• NCBI Gene
  619645

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105422	Ensembl Gene Model | MGI Sequence Detail	938	C57BL/6J
transcript	ENSMUST00000197666	Ensembl | MGI Sequence Detail	938	Not Applicable

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:119563 Alt B, et al., Arteries define the position of the thyroid gland during its developmental relocalisation. Development. 2006 Oct;133(19):3797-804