Gm5189 Pseudogene Detail

Summary

• Symbol
  Gm5189
• Name
  predicted gene 5189

• Feature Type
  pseudogene
• IDs
  MGI:3647067
  NCBI Gene: 382640
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:112717705-112717965 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 61.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647067	pseudogene	Chr12:112717475-112718003 (-)
129S1/SvImJ	ENSMUSG00200028096	pseudogene	Chr12:104496114-104496374 (-)
A/J	ENSMUSG00195050114	pseudogene	Chr12:107015618-107015878 (-)
AKR/J	ENSMUSG00220039120	pseudogene	Chr12:104920747-104921007 (-)
BALB/cJ	ENSMUSG00180052693	pseudogene	Chr12:106264798-106265058 (-)
C3H/HeJ	ENSMUSG00175045759	pseudogene	Chr12:108842385-108842645 (-)
C57BL/6NJ	ENSMUSG00215048033	pseudogene	Chr12:105532239-105532499 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041779	pseudogene	Chr12:105005325-105005582 (-)
CBA/J	ENSMUSG00210034815	pseudogene	Chr12:105898447-105898707 (-)
DBA/2J	ENSMUSG00185031999	pseudogene	Chr12:107716189-107716449 (-)
FVB/NJ	ENSMUSG00205041491	pseudogene	Chr12:104938417-104938677 (-)
JF1/MsJ	ENSUMUG00000026264	pseudogene	Chr12:112489918-112490177 (-)
LP/J	ENSMUSG00230044959	pseudogene	Chr12:114760591-114760851 (-)
NOD/ShiLtJ	ENSMUSG00190049235	pseudogene	Chr12:80288145-80288405 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010045598	pseudogene	Chr12:105940427-105940687 (-)
SPRET/EiJ	ENSMSPG00010022205	pseudogene	Chr12:108224135-108224395 (-)
WSB/EiJ	ENSIUOG00005038963	pseudogene	Chr12:104928193-104928453 (-)

Homology

• Gene Tree
  Gm5189
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000113231 (Evidence)
• NCBI Gene
  382640

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113231	Ensembl Gene Model | MGI Sequence Detail	261	C57BL/6J
transcript	ENSMUST00000221796	Ensembl | MGI Sequence Detail	261	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;