Rps13-ps1 Pseudogene Detail

Summary

• Symbol
  Rps13-ps1
• Name
  ribosomal protein S13, pseudogene 1
• Synonyms
  Gm6573

• Feature Type
  pseudogene
• IDs
  MGI:3647042
  NCBI Gene: 625298
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:87774322-87774843 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 42.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647042	pseudogene	Chr8:87774317-87774854 (+)
129S1/SvImJ	ENSMUSG00200017323	pseudogene	Chr8:82127205-82127743 (+)
129S1/SvImJ	ENSMUSG00200044727	pseudogene	Chr9:67350137-67350669 (-)
A/J	ENSMUSG00195028487	pseudogene	Chr8:82483632-82484170 (+)
AKR/J	ENSMUSG00220002287	pseudogene	Chr6:78274984-78275515 (+)
AKR/J	ENSMUSG00220039771	pseudogene	Chr8:82526064-82526602 (+)
BALB/cJ	ENSMUSG00180023286	pseudogene	Chr8:82330715-82331253 (+)
C3H/HeJ	ENSMUSG00175027398	pseudogene	Chr8:82419157-82419695 (+)
C57BL/6NJ	ENSMUSG00215029682	pseudogene	Chr8:82041061-82041598 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017455	pseudogene	Chr8:81898709-81898713 (+)
CBA/J	ENSMUSG00210036393	pseudogene	Chr8:82406230-82406768 (+)
DBA/2J	ENSMUSG00185038632	pseudogene	Chr8:88514793-88515331 (+)
FVB/NJ	ENSMUSG00205041177	pseudogene	Chr8:81462041-81462579 (+)
JF1/MsJ	ENSUMUG00000039656	pseudogene	Chr8:90823833-90823837 (+)
LP/J	ENSMUSG00230031810	pseudogene	Chr8:92124047-92124585 (+)
LP/J	ENSMUSG00230038591	pseudogene	Chr7:114542643-114545252 (-)
LP/J	ENSMUSG00230028597	pseudogene	Chr9:67545266-67545798 (-)
NOD/ShiLtJ	ENSMUSG00190015760	pseudogene	Chr8:82495997-82496534 (+)
NZO/HlLtJ	ENSMUSG00225040399	pseudogene	Chr8:95531908-95532445 (+)
PWK/PhJ	ENSLUMG00010045038	pseudogene	Chr8:82130349-82130353 (+)
SPRET/EiJ	ENSMSPG00010029648	pseudogene	Chr8:84053719-84053723 (+)
WSB/EiJ	ENSIUOG00005019893	pseudogene	Chr8:83216421-83216425 (+)

Homology

• Gene Tree
  Rps13-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  30 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Rps13-ps1
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000066362 (Evidence)
• NCBI Gene
  625298

Representative Sequences			Length	Strain/Species
genomic	625298	NCBI Gene Model | MGI Sequence Detail	522	C57BL/6J

References

• Summaries
  All 34

  Phenotypes 30
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Rps13-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78589	Chr8:87774317-87774342 (+)	8 bp