Hspd1-ps2 Pseudogene Detail

Summary

• Symbol
  Hspd1-ps2
• Name
  heat shock protein 1 (chaperonin), pseudogene 2
• Synonyms
  Gm5349

• Feature Type
  pseudogene
• IDs
  MGI:3647040
  NCBI Gene: 384830
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:62939826-62941522 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 31.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647040	pseudogene	Chr8:62939429-62941583 (-)
129S1/SvImJ	ENSMUSG00200007651	pseudogene	Chr8:57768104-57769800 (-)
A/J	ENSMUSG00195012703	pseudogene	Chr8:58120435-58122131 (-)
AKR/J	ENSMUSG00220005790	pseudogene	Chr8:57941820-57943516 (-)
BALB/cJ	ENSMUSG00180014255	pseudogene	Chr8:57734973-57736669 (-)
C3H/HeJ	ENSMUSG00175008049	pseudogene	Chr8:57960115-57961811 (-)
C57BL/6NJ	ENSMUSG00215008186	pseudogene	Chr8:57761284-57762980 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006798	pseudogene	Chr8:57633984-57635680 (-)
CBA/J	ENSMUSG00210009181	pseudogene	Chr8:57841148-57842844 (-)
DBA/2J	ENSMUSG00185022985	pseudogene	Chr8:63894477-63896173 (-)
FVB/NJ	ENSMUSG00205013031	pseudogene	Chr8:57171460-57173156 (-)
JF1/MsJ	ENSUMUG00000015581	pseudogene	Chr8:66191697-66193393 (-)
LP/J	ENSMUSG00230006970	pseudogene	Chr8:67552691-67554387 (-)
NOD/ShiLtJ	ENSMUSG00190010236	pseudogene	Chr8:57723695-57725391 (-)
NZO/HlLtJ	ENSMUSG00225031128	pseudogene	Chr8:70987276-70988972 (-)
PWK/PhJ	ENSLUMG00010013611	pseudogene	Chr8:57646300-57647996 (-)
SPRET/EiJ	ENSMSPG00010015453	pseudogene	Chr8:58831687-58833433 (-)
WSB/EiJ	ENSIUOG00005017446	pseudogene	Chr8:58670540-58672236 (-)

Homology

• Gene Tree
  Hspd1-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Hspd1-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109687 (Evidence)
• NCBI Gene
  384830

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109687	Ensembl Gene Model | MGI Sequence Detail	1697	C57BL/6J
transcript	ENSMUST00000210003	Ensembl | MGI Sequence Detail	1697	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;