Gm5504 Pseudogene Detail

Summary

• Symbol
  Gm5504
• Name
  predicted gene 5504

• Feature Type
  pseudogene
• IDs
  MGI:3646951
  NCBI Gene: 433177
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:42333808-42334412 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 22.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646951	pseudogene	Chr18:42333724-42334657 (+)
129S1/SvImJ	ENSMUSG00200044657	pseudogene	Chr18:39359353-39359957 (+)
A/J	ENSMUSG00195038921	pseudogene	Chr18:39515280-39515884 (+)
AKR/J	ENSMUSG00220017393	pseudogene	Chr18:39478869-39479473 (+)
BALB/cJ	ENSMUSG00180021860	pseudogene	Chr18:39960688-39961292 (+)
C3H/HeJ	ENSMUSG00175041482	pseudogene	Chr18:39461823-39462427 (+)
C57BL/6NJ	ENSMUSG00215030004	pseudogene	Chr18:39211333-39211937 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024097	pseudogene	Chr18:39054184-39054789 (+)
CBA/J	ENSMUSG00210021647	pseudogene	Chr18:39526444-39527048 (+)
DBA/2J	ENSMUSG00185021615	pseudogene	Chr18:39435280-39435884 (+)
FVB/NJ	ENSMUSG00205032980	pseudogene	Chr18:39093089-39093693 (+)
JF1/MsJ	ENSUMUG00000047490	pseudogene	Chr18:39565826-39566431 (+)
LP/J	ENSMUSG00230028549	pseudogene	Chr18:41549867-41550471 (+)
NOD/ShiLtJ	ENSMUSG00190023049	pseudogene	Chr18:39227020-39227624 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012918	pseudogene	Chr18:39701966-39702571 (+)
SPRET/EiJ	ENSMSPG00010022459	pseudogene	Chr18:39826852-39827460 (+)
WSB/EiJ	ENSIUOG00005008228	pseudogene	Chr18:39184938-39185542 (+)

Homology

• Gene Tree
  Gm5504
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000117753 (Evidence)
• NCBI Gene
  433177

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117753	Ensembl Gene Model | MGI Sequence Detail	605	C57BL/6J
transcript	ENSMUST00000236748	Ensembl | MGI Sequence Detail	605	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;