Gm9054 Gene Detail

Summary

• Symbol
  Gm9054
• Name
  predicted gene 9054

• Feature Type
  lncRNA gene
• IDs
  MGI:3646918
  NCBI Gene: 668224
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:95892822-95894279 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646918	lncRNA gene	Chr3:95892796-95896187 (+)
129S1/SvImJ	ENSMUSG00200044788	lncRNA gene	Chr3:92552007-92555272 (+)
A/J	ENSMUSG00195049795	lncRNA gene	Chr3:92876510-92879775 (+)
AKR/J	ENSMUSG00220041415	lncRNA gene	Chr3:91263643-91267027 (+)
BALB/cJ	ENSMUSG00180041363	lncRNA gene	Chr3:92875848-92879122 (+)
C3H/HeJ	ENSMUSG00175033686	lncRNA gene	Chr3:92520151-92523416 (+)
C57BL/6NJ	ENSMUSG00215038995	lncRNA gene	Chr3:93239090-93242474 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048345	lncRNA gene	Chr3:93072287-93075571 (+)
CBA/J	ENSMUSG00210051354	lncRNA gene	Chr3:93057613-93060878 (+)
DBA/2J	ENSMUSG00185046785	lncRNA gene	Chr3:93475631-93479015 (+)
FVB/NJ	ENSMUSG00205051176	lncRNA gene	Chr3:92170727-92173991 (+)
JF1/MsJ	ENSUMUG00000051188	lncRNA gene	Chr3:92367442-92370710 (+)
LP/J	ENSMUSG00230046251	lncRNA gene	Chr3:95415410-95418675 (+)
NOD/ShiLtJ	ENSMUSG00190049620	lncRNA gene	Chr3:93582987-93586268 (+)
NZO/HlLtJ	ENSMUSG00225012359	lncRNA gene	Chr3:97838026-97841300 (+)
PWK/PhJ	ENSLUMG00010052712	lncRNA gene	Chr3:92347059-92350331 (+)
SPRET/EiJ	ENSMSPG00010047184	lncRNA gene	Chr3:92647746-92651054 (+)
WSB/EiJ	ENSIUOG00005032999	lncRNA gene	Chr3:92995277-92998551 (+)

Homology

• Gene Tree
  Gm9054
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9054
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000119955 (Evidence)
• NCBI Gene
  668224

Representative Sequences			Length	Strain/Species
genomic	668224	NCBI Gene Model | MGI Sequence Detail	1458	C57BL/6J
transcript	NR_045872	RefSeq | MGI Sequence Detail	707	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9054:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30670	Chr3:95892802-95892835 (+)	-3 bp