Gm6136 MGI Mouse Pseudogene Detail - MGI:3646897

Symbol

Gm6136
Name

predicted pseudogene 6136

Feature Type

pseudogene
IDs

MGI:3646897
NCBI Gene: 620213
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr1:86836515-86837405 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 44.02 cM
Mapping Data

1 experiment

SNPs within 2kb

64 from dbSNP Build 142
Strain Annotations

38

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646897	pseudogene	Chr1:86836484-86837430 (-)
129S1/SvImJ	ENSMUSG00200050737	pseudogene	Chr11:68236924-68237814 (+)
129S1/SvImJ	ENSMUSG00200038108	pseudogene	Chr1:84076885-84077775 (-)
A/J	ENSMUSG00195034352	pseudogene	Chr1:83637355-83638245 (-)
AKR/J	ENSMUSG00220054293	pseudogene	Chr11:68407649-68408539 (+)
AKR/J	ENSMUSG00220046720	pseudogene	Chr1:83755995-83756885 (-)
BALB/cJ	ENSMUSG00180017089	pseudogene	Chr1:83925493-83926383 (-)
BALB/cJ	ENSMUSG00180054209	pseudogene	Chr11:68335543-68336433 (+)
C3H/HeJ	ENSMUSG00175054539	pseudogene	Chr11:68282851-68283741 (+)
C3H/HeJ	ENSMUSG00175001669	pseudogene	Chr1:83811778-83812668 (-)
C57BL/6NJ	ENSMUSG00215036164	pseudogene	Chr1:83727377-83728267 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002298	pseudogene	Chr1:185901503-185902393 (+)
CAST/EiJ	ENSTCUG00005010101	pseudogene	Chr13:90438174-90439064 (+)
CAST/EiJ	ENSTCUG00005007772	pseudogene	Chr1:83382705-83383594 (-)
CAST/EiJ	ENSTCUG00005025522	pseudogene	Chr5:34243342-34244232 (-)
CAST/EiJ	ENSTCUG00005012804	pseudogene	Chr16:67344818-67345707 (-)
CBA/J	ENSMUSG00210012498	pseudogene	Chr1:83649779-83650669 (-)
CBA/J	ENSMUSG00210054459	pseudogene	Chr11:68136926-68137816 (+)
DBA/2J	ENSMUSG00185056961	pseudogene	Chr11:68416493-68417383 (+)
DBA/2J	ENSMUSG00185017406	pseudogene	Chr1:88121625-88122515 (-)
FVB/NJ	ENSMUSG00205054033	pseudogene	Chr11:68229864-68230754 (+)
FVB/NJ	ENSMUSG00205041682	pseudogene	Chr1:83070157-83071047 (-)
JF1/MsJ	ENSUMUG00000057371	pseudogene	Chr11:68815239-68816129 (+)
JF1/MsJ	ENSUMUG00000048046	pseudogene	Chr2:79362131-79363021 (+)
JF1/MsJ	ENSUMUG00000012930	pseudogene	Chr7:69906166-69907050 (+)
JF1/MsJ	ENSUMUG00000023799	pseudogene	Chr1:86892135-86893025 (-)
LP/J	ENSMUSG00230022807	pseudogene	Chr1:87406456-87407346 (-)
LP/J	ENSMUSG00230054066	pseudogene	Chr11:69448087-69448977 (+)
NOD/ShiLtJ	ENSMUSG00190035538	pseudogene	Chr1:83705011-83705901 (-)
NOD/ShiLtJ	ENSMUSG00190054326	pseudogene	Chr11:68402453-68403343 (+)
NZO/HlLtJ	ENSMUSG00225018257	pseudogene	Chr7:69512689-69513573 (+)
NZO/HlLtJ	ENSMUSG00225040322	pseudogene	Chr11:71629280-71630170 (+)
NZO/HlLtJ	ENSMUSG00225004901	pseudogene	Chr1:91309171-91310061 (-)
PWK/PhJ	ENSLUMG00010019941	pseudogene	Chr7:59452762-59453646 (+)
PWK/PhJ	ENSLUMG00010035844	pseudogene	Chr2:79532959-79533849 (+)
PWK/PhJ	ENSLUMG00010047911	pseudogene	Chr1:83274214-83275104 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005043681	pseudogene	Chr1:83307063-83307953 (-)
WSB/EiJ	ENSIUOG00005053061	pseudogene	Chr11:68357022-68357912 (+)

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Gene Tree

Gm6136

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Radiation induced

1
Genomic Mutations

2 involving Gm6136
Find Mice (IMSR)

1 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597

Tissue x Stage Matrix

Other Mouse Links

Expression Atlas

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All Sequences

42
RefSeq

1

Ensembl

ENSMUSG00000084106 (Evidence)
NCBI Gene

620213

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000084106	Ensembl Gene Model \| MGI Sequence Detail	891	C57BL/6J	± kb
	transcript	ENSMUST00000120149	Ensembl \| MGI Sequence Detail	891	Not Applicable

Summaries

All 9

Phenotypes 4
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm6136:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12816	Chr1:86837425-86837429 (-)	-22 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/15/2026 MGI 6.29