Gm16378 Pseudogene Detail

Summary

• Symbol
  Gm16378
• Name
  predicted gene 16378

• Feature Type
  pseudogene
• IDs
  MGI:3646886
  NCBI Gene: 100043225
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:123568470-123568811 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 71.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646886	pseudogene	Chr8:123568317-123568984 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195027398	pseudogene	Chr8:118197536-118197877 (+)
AKR/J	ENSMUSG00220043904	pseudogene	Chr8:118388670-118389011 (+)
BALB/cJ	ENSMUSG00180030565	pseudogene	Chr8:118243555-118243896 (+)
C3H/HeJ	ENSMUSG00175033616	pseudogene	Chr8:118300388-118300729 (+)
C57BL/6NJ	ENSMUSG00215036487	pseudogene	Chr8:117874493-117874834 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210037768	pseudogene	Chr8:118226942-118227283 (+)
DBA/2J	ENSMUSG00185037243	pseudogene	Chr8:124331879-124332220 (+)
FVB/NJ	ENSMUSG00205038080	pseudogene	Chr8:117193140-117193481 (+)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190021130	pseudogene	Chr8:118327432-118327773 (+)
NZO/HlLtJ	ENSMUSG00225043244	pseudogene	Chr8:131332360-131332701 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005030703	pseudogene	Chr8:119019666-119020007 (+)

Homology

• Gene Tree
  Gm16378
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1
• CCDS
  CCDS40506.1

• Ensembl
  ENSMUSG00000095762 (Evidence)
• NCBI Gene
  100043225

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095762	Ensembl Gene Model | MGI Sequence Detail	342	C57BL/6J
transcript	ENSMUST00000179168	Ensembl | MGI Sequence Detail	342	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;