Gm7646 Pseudogene Detail

Summary

• Symbol
  Gm7646
• Name
  predicted gene 7646

• Feature Type
  pseudogene
• IDs
  MGI:3646880
  NCBI Gene: 665468
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:87438038-87459676 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 43.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  877 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646880	pseudogene	Chr5:87437995-87459676 (-)
129S1/SvImJ	ENSMUSG00200009676	pseudogene	Chr5:83173790-83195408 (-)
A/J	ENSMUSG00195027008	pseudogene	Chr5:82339459-82361090 (-)
AKR/J	ENSMUSG00220012086	pseudogene	Chr5:82473365-82495002 (-)
BALB/cJ	ENSMUSG00180026755	pseudogene	Chr5:82165797-82187419 (-)
C3H/HeJ	ENSMUSG00175043976	pseudogene	Chr5:84243895-84265523 (-)
C57BL/6NJ	ENSMUSG00215030668	pseudogene	Chr5:83032483-83054125 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038793	pseudogene	Chr5:81874820-81902251 (-)
CBA/J	ENSMUSG00210006984	pseudogene	Chr5:83062715-83084341 (-)
DBA/2J	ENSMUSG00185040494	pseudogene	Chr5:84981877-85003500 (-)
FVB/NJ	ENSMUSG00205030467	pseudogene	Chr5:81868008-81889649 (-)
JF1/MsJ	ENSUMUG00000001197	pseudogene	Chr5:89447386-89468923 (-)
LP/J	ENSMUSG00230001867	pseudogene	Chr5:89703750-89725369 (-)
NOD/ShiLtJ	ENSMUSG00190043140	pseudogene	Chr5:81923999-81945624 (-)
NZO/HlLtJ	ENSMUSG00225010148	pseudogene	Chr5:94728318-94749939 (-)
PWK/PhJ	ENSLUMG00010032913	pseudogene	Chr5:81943568-81965113 (-)
SPRET/EiJ	ENSMSPG00010038126	pseudogene	Chr5:84229590-84250658 (-)
WSB/EiJ	ENSIUOG00005029489	pseudogene	Chr5:84881593-84903226 (-)

Homology

• Gene Tree
  Gm7646
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm7646
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105897 (Evidence)
• NCBI Gene
  665468

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105897	Ensembl Gene Model | MGI Sequence Detail	21639	C57BL/6J
transcript	ENSMUST00000198590	Ensembl | MGI Sequence Detail	1559	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm7646:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51574	Chr5:87444125-87444126 (-)	15,550 bp