Gm16386 Pseudogene Detail

Summary

• Symbol
  Gm16386
• Name
  predicted gene 16386
• Synonyms
  ENSMUSG00000073442, Gm21017

• Feature Type
  pseudogene
• IDs
  MGI:3646848
  NCBI Gene: 100042679
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:22996191-23026710 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  867 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646848	pseudogene	Chr17:22995204-23036721 (-)
129S1/SvImJ	ENSMUSG00200038735	pseudogene	Chr17:18540835-18571284 (-)
A/J	ENSMUSG00195038246	pseudogene	Chr17:19551518-19581971 (-)
AKR/J	ENSMUSG00220026593	pseudogene	Chr17:18561080-18591593 (-)
AKR/J	ENSMUSG00220023931	protein coding gene	Chr17:18536647-18601693 (-)
BALB/cJ	ENSMUSG00180017966	pseudogene	Chr17:18841624-18872077 (-)
C3H/HeJ	ENSMUSG00175041977	pseudogene	Chr17:18507183-18537696 (-)
C3H/HeJ	ENSMUSG00175037531	protein coding gene	Chr17:18514524-18547796 (-)
C57BL/6NJ	ENSMUSG00215043499	pseudogene	Chr17:18488945-18519465 (-)
C57BL/6NJ	ENSMUSG00215039230	protein coding gene	Chr17:18493779-18529565 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023495	pseudogene	Chr17:19172188-19209464 (-)
CBA/J	ENSMUSG00210040627	pseudogene	Chr17:18268834-18299349 (-)
CBA/J	ENSMUSG00210037997	protein coding gene	Chr17:18273668-18309449 (-)
DBA/2J	ENSMUSG00185054804	pseudogene	Chr17:20647906-20678357 (-)
FVB/NJ	ENSMUSG00205037477	pseudogene	Chr17:18982176-19012689 (-)
FVB/NJ	ENSMUSG00205023802	protein coding gene	Chr17:18989517-19022789 (-)
JF1/MsJ	ENSUMUG00000037595	pseudogene	Chr17:20084370-20121236 (-)
LP/J	ENSMUSG00230055126	pseudogene	Chr17:22045819-22076274 (-)
NOD/ShiLtJ	ENSMUSG00190038202	pseudogene	Chr17:18479123-18509638 (-)
NOD/ShiLtJ	ENSMUSG00190035693	protein coding gene	Chr17:18483957-18519738 (-)
NZO/HlLtJ	ENSMUSG00225054797	pseudogene	Chr17:23968888-23999341 (-)
PWK/PhJ	ENSLUMG00010020606	pseudogene	Chr17:18070286-18107510 (-)
SPRET/EiJ	ENSMSPG00010040696	pseudogene	Chr17:19455417-19518591 (-)
WSB/EiJ	ENSIUOG00005040419	pseudogene	Chr17:19274961-19305474 (-)

Homology

• Gene Tree
  Gm16386
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm16386
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000117333 (Evidence)
• NCBI Gene
  100042679

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117333	Ensembl Gene Model | MGI Sequence Detail	30520	C57BL/6J
transcript	ENSMUST00000233975	Ensembl | MGI Sequence Detail	1533	Not Applicable
polypeptide	Q3UNB7	UniProt | EBI | MGI Sequence Detail	85	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3642075, MGI:5434372

References

• Summaries
  All 25

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964