Teddm1b Gene Detail

Summary

• Symbol
  Teddm1b
• Name
  transmembrane epididymal protein 1B
• Synonyms
  Gm5531

• Feature Type
  protein coding gene
• IDs
  MGI:3646829
  NCBI Gene: 433365
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:153750091-153752617 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 65.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646829	protein coding gene	Chr1:153750089-153752622 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016604	protein coding gene	Chr1:158735658-158738201 (+)
A/J	MGP_AJ_G0016586	protein coding gene	Chr1:152332936-152336297 (+)
AKR/J	MGP_AKRJ_G0016551	protein coding gene	Chr1:157047529-157051425 (+)
BALB/cJ	MGP_BALBcJ_G0016546	protein coding gene	Chr1:152877694-152880699 (+)
C3H/HeJ	MGP_C3HHeJ_G0016371	protein coding gene	Chr1:157150452-157163495 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017007	protein coding gene	Chr1:164206384-164212085 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014716	protein coding gene	Chr1:144613839-144616148 (+)
CAST/EiJ	MGP_CASTEiJ_G0015950	protein coding gene	Chr1:156669572-156671890 (+)
CBA/J	MGP_CBAJ_G0016345	protein coding gene	Chr1:170000911-170005443 (+)
DBA/2J	MGP_DBA2J_G0016451	protein coding gene	Chr1:151350390-151352701 (+)
FVB/NJ	MGP_FVBNJ_G0016449	protein coding gene	Chr1:149808265-149811027 (+)
LP/J	MGP_LPJ_G0016522	protein coding gene	Chr1:159876946-159890250 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0017043	protein coding gene	Chr1:156822665-156827637 (+)
PWK/PhJ	MGP_PWKPhJ_G0015736	protein coding gene	Chr1:150396769-150399632 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015523	protein coding gene	Chr1:155623781-155626075 (+)
WSB/EiJ	MGP_WSBEiJ_G0016013	protein coding gene	Chr1:156909680-156913224 (+)

Homology

• Human Ortholog
  TEDDM1, transmembrane epididymal protein 1

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TEDDM1, transmembrane epididymal protein 1
  
• Synonyms
  EDDM9, Epdd1, HE9, HEL-S-45e, TMEM45C
• Links
  HGNC:30233

  NCBI Gene ID: 127670

  neXtProt AC: NX_Q5T9Z0

  UniProt: Q5T9Z0

  
  
• Chr Location
  1q25.3; chr1:182398117-182400667 (-)  GRCh38

---

• MGI Vertebrate Homology
  Teddm1b stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: TEDDM1
• Gene Tree
  Teddm1b
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Teddm1b
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS15379.1

• Ensembl
  ENSMUSG00000043282 (Evidence)
• NCBI Gene
  433365

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000043282	Ensembl Gene Model | MGI Sequence Detail	2527	C57BL/6J
transcript	ENSMUST00000055314	Ensembl | MGI Sequence Detail	2527	Not Applicable
polypeptide	ENSMUSP00000058437	Ensembl | MGI Sequence Detail	306	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR006904 Protein of unknown function DUF716

Molecular
Reagents

• All nucleic 3

  Genomic 2

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Teddm1b:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9497	Chr1:153750081-153750100 (+)	0 bp