Gm8688 Pseudogene Detail

Summary

• Symbol
  Gm8688
• Name
  predicted gene 8688

• Feature Type
  pseudogene
• IDs
  MGI:3646820
  NCBI Gene: 667531
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:100390651-100392039 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 49.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646820	pseudogene	Chr8:100390651-100392039 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040668	pseudogene	Chr8:101379840-101381228 (+)
A/J	MGP_AJ_G0040667	pseudogene	Chr8:97407483-97408871 (+)
AKR/J	MGP_AKRJ_G0040593	pseudogene	Chr8:100200445-100201833 (+)
BALB/cJ	MGP_BALBcJ_G0040657	pseudogene	Chr8:97504167-97505555 (+)
C3H/HeJ	MGP_C3HHeJ_G0040293	pseudogene	Chr8:100845224-100846612 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041356	pseudogene	Chr8:105106452-105107840 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039333	pseudogene	Chr8:100406469-100408795 (+)
CBA/J	MGP_CBAJ_G0040261	pseudogene	Chr8:108660621-108662009 (+)
DBA/2J	MGP_DBA2J_G0040472	pseudogene	Chr8:96872955-96874343 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040509	pseudogene	Chr8:101473856-101475244 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040397	pseudogene	Chr8:111240873-111244004 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041399	pseudogene	Chr8:100234141-100235529 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038699	pseudogene	Chr8:99091046-99092766 (+)
WSB/EiJ	MGP_WSBEiJ_G0039585	pseudogene	Chr8:100844180-100845568 (+)

Homology

• Gene Tree
  Gm8688
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000083586 (Evidence)
• NCBI Gene
  667531

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083586	Ensembl Gene Model | MGI Sequence Detail	1389	C57BL/6J
transcript	ENSMUST00000118240	Ensembl | MGI Sequence Detail	969	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8688:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79015	Chr8:100390551-100390595 (+)	-78 bp
Tssr79016	Chr8:100390634-100390641 (+)	-13 bp