Gm6518 Pseudogene Detail

Summary

• Symbol
  Gm6518
• Name
  predicted gene 6518

• Feature Type
  pseudogene
• IDs
  MGI:3646789
  NCBI Gene: 624672
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:28176749-28179300 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 16.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646789	pseudogene	Chr7:28176703-28179300 (-)
129S1/SvImJ	ENSMUSG00200046132	pseudogene	Chr7:17963070-17963595 (-)
A/J	ENSMUSG00195051407	pseudogene	Chr7:20635826-20636351 (-)
AKR/J	ENSMUSG00220053362	pseudogene	Chr7:23849425-23849950 (+)
BALB/cJ	ENSMUSG00180053944	pseudogene	Chr7:18695371-18695896 (-)
C3H/HeJ	ENSMUSG00175052516	pseudogene	Chr7:19730948-19731473 (-)
C57BL/6NJ	ENSMUSG00215054837	pseudogene	Chr7:17866572-17867097 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052585	pseudogene	Chr7:19663402-19663927 (-)
CBA/J	ENSMUSG00210053720	pseudogene	Chr7:18915546-18916071 (-)
DBA/2J	ENSMUSG00185054874	pseudogene	Chr7:22028230-22028755 (-)
FVB/NJ	ENSMUSG00205052060	pseudogene	Chr7:18701472-18701997 (-)
JF1/MsJ	ENSUMUG00000057676	pseudogene	Chr7:26429264-26429788 (-)
LP/J	ENSMUSG00230053885	pseudogene	Chr7:27198761-27199286 (-)
NOD/ShiLtJ	ENSMUSG00190053256	pseudogene	Chr7:18362526-18363051 (-)
NZO/HlLtJ	ENSMUSG00225027609	pseudogene	Chr7:26041896-26042421 (-)
PWK/PhJ	ENSLUMG00010051450	pseudogene	Chr7:18393151-18393675 (-)
SPRET/EiJ	ENSMSPG00010051274	pseudogene	Chr7:17752758-17753283 (-)
WSB/EiJ	ENSIUOG00005053603	pseudogene	Chr7:12623212-12623737 (-)

Homology

• Gene Tree
  Gm6518
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000109201 (Evidence)
• NCBI Gene
  624672

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109201	Ensembl Gene Model | MGI Sequence Detail	2552	C57BL/6J
transcript	ENSMUST00000208450	Ensembl | MGI Sequence Detail	507	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;