Gm5427 Gene Detail

Summary

• Symbol
  Gm5427
• Name
  predicted gene 5427

• Feature Type
  lncRNA gene
• IDs
  MGI:3646787
  NCBI Gene: 432494
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:98489661-98536475 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1306 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646787	lncRNA gene	Chr10:98489661-98536475 (-)
129S1/SvImJ	ENSMUSG00200020372	lncRNA gene	Chr10:95005539-95051459 (-)
A/J	ENSMUSG00195016397	lncRNA gene	Chr10:95432118-95478031 (-)
AKR/J	ENSMUSG00220027130	lncRNA gene	Chr10:94986171-95032105 (-)
BALB/cJ	ENSMUSG00180009588	lncRNA gene	Chr10:95439958-95485873 (-)
C3H/HeJ	ENSMUSG00175005902	lncRNA gene	Chr10:95334577-95380487 (-)
C57BL/6NJ	ENSMUSG00215008355	lncRNA gene	Chr10:95023380-95069296 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005805	lncRNA gene	Chr10:94708341-94760598 (-)
CBA/J	ENSMUSG00210022845	lncRNA gene	Chr10:95164492-95210406 (-)
DBA/2J	ENSMUSG00185019773	lncRNA gene	Chr10:95382073-95427988 (-)
FVB/NJ	ENSMUSG00205003545	lncRNA gene	Chr10:95083798-95129709 (-)
JF1/MsJ	ENSUMUG00000030673	lncRNA gene	Chr10:96796500-96848798 (-)
LP/J	ENSMUSG00230022188	lncRNA gene	Chr10:97292930-97338849 (-)
NOD/ShiLtJ	ENSMUSG00190026130	lncRNA gene	Chr10:95418233-95464154 (-)
NZO/HlLtJ	ENSMUSG00225021996	lncRNA gene	Chr10:101531658-101577570 (-)
PWK/PhJ	ENSLUMG00010005644	lncRNA gene	Chr10:95086974-95139507 (-)
SPRET/EiJ	ENSMSPG00010010471	lncRNA gene	Chr10:96790796-96843559 (-)
WSB/EiJ	ENSIUOG00005013637	lncRNA gene	Chr10:95120044-95165987 (-)

Homology

• Gene Tree
  Gm5427
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5427
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000112647 (Evidence)
• NCBI Gene
  432494

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112647	Ensembl Gene Model | MGI Sequence Detail	46815	C57BL/6J
transcript	ENSMUST00000217680	Ensembl | MGI Sequence Detail	2591	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm5427:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99101	Chr10:98525924-98525956 (-)	10,535 bp