Gm6550 Pseudogene Detail

Summary

• Symbol
  Gm6550
• Name
  predicted gene 6550

• Feature Type
  pseudogene
• IDs
  MGI:3646786
  NCBI Gene: 625057
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:145040689-145041681 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 63.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  212 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646786	pseudogene	Chr1:145040615-145041779 (-)
129S1/SvImJ	ENSMUSG00200008482	pseudogene	Chr1:142513886-142514878 (-)
A/J	ENSMUSG00195017786	pseudogene	Chr1:141836345-141837337 (-)
AKR/J	ENSMUSG00220003483	pseudogene	Chr1:141592362-141593354 (-)
BALB/cJ	ENSMUSG00180011748	pseudogene	Chr1:142045187-142046179 (-)
C3H/HeJ	ENSMUSG00175007061	pseudogene	Chr1:142053764-142054756 (-)
C57BL/6NJ	ENSMUSG00215022392	pseudogene	Chr1:141974602-141975594 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009292	pseudogene	Chr1:136329279-136330270 (-)
CAST/EiJ	ENSTCUG00005013463	pseudogene	Chr1:140751815-140752807 (-)
CBA/J	ENSMUSG00210014465	pseudogene	Chr1:141974469-141975461 (-)
DBA/2J	ENSMUSG00185007354	pseudogene	Chr1:146293795-146294787 (-)
FVB/NJ	ENSMUSG00205002669	pseudogene	Chr1:141188735-141189727 (-)
JF1/MsJ	ENSUMUG00000013246	pseudogene	Chr1:145550809-145551799 (-)
LP/J	ENSMUSG00230000563	pseudogene	Chr1:145807195-145808187 (-)
NOD/ShiLtJ	ENSMUSG00190002995	pseudogene	Chr1:141812363-141813355 (-)
NZO/HlLtJ	ENSMUSG00225000179	pseudogene	Chr1:149572512-149573504 (-)
PWK/PhJ	ENSLUMG00010002093	pseudogene	Chr1:140890140-140891130 (-)
SPRET/EiJ	ENSMSPG00010005766	pseudogene	Chr1:143871810-143872802 (-)
WSB/EiJ	ENSIUOG00005028916	pseudogene	Chr1:141397667-141398659 (-)

Homology

• Gene Tree
  Gm6550
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm6550
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099617 (Evidence)
• NCBI Gene
  625057

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099617	Ensembl Gene Model | MGI Sequence Detail	993	C57BL/6J
transcript	ENSMUST00000187574	Ensembl | MGI Sequence Detail	993	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;