Gm5971 Pseudogene Detail

Summary

• Symbol
  Gm5971
• Name
  predicted gene 5971

• Feature Type
  pseudogene
• IDs
  MGI:3646764
  NCBI Gene: 546719
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:86944089-86945043 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 58.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646764	pseudogene	Chr18:86944075-86945074 (-)
129S1/SvImJ	ENSMUSG00200015368	pseudogene	Chr18:84232166-84233120 (-)
A/J	ENSMUSG00195001327	pseudogene	Chr18:84237801-84238755 (-)
AKR/J	ENSMUSG00220016794	pseudogene	Chr18:84145373-84146327 (-)
BALB/cJ	ENSMUSG00180002766	pseudogene	Chr18:84789848-84790802 (-)
C3H/HeJ	ENSMUSG00175018791	pseudogene	Chr18:84342272-84343226 (-)
C57BL/6NJ	ENSMUSG00215004272	pseudogene	Chr18:83748871-83749825 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005469	pseudogene	Chr18:83284481-83285436 (-)
CBA/J	ENSMUSG00210018256	pseudogene	Chr18:84282899-84283853 (-)
DBA/2J	ENSMUSG00185004285	pseudogene	Chr18:84185505-84186459 (-)
FVB/NJ	ENSMUSG00205014027	pseudogene	Chr18:83584812-83585766 (-)
JF1/MsJ	ENSUMUG00000018187	pseudogene	Chr18:84048516-84049470 (-)
LP/J	ENSMUSG00230017937	pseudogene	Chr18:86295348-86296302 (-)
NOD/ShiLtJ	ENSMUSG00190003475	pseudogene	Chr18:84000507-84001461 (-)
NZO/HlLtJ	ENSMUSG00225023542	pseudogene	Chr18:86183148-86184102 (-)
PWK/PhJ	ENSLUMG00010004162	pseudogene	Chr18:84440118-84441072 (-)
SPRET/EiJ	ENSMSPG00010001292	pseudogene	Chr18:84929061-84929958 (-)
WSB/EiJ	ENSIUOG00005016513	pseudogene	Chr18:83668351-83669305 (-)

Homology

• Gene Tree
  Gm5971
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000117908 (Evidence)
• NCBI Gene
  546719

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117908	Ensembl Gene Model | MGI Sequence Detail	955	C57BL/6J
transcript	ENSMUST00000236018	Ensembl | MGI Sequence Detail	955	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;