Gm6245 Pseudogene Detail

Summary

• Symbol
  Gm6245
• Name
  predicted gene 6245

• Feature Type
  pseudogene
• IDs
  MGI:3646756
  NCBI Gene: 621629
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:40931516-40932283 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 20.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646756	pseudogene	Chr13:40931370-40932478 (+)
129S1/SvImJ	ENSMUSG00200013125	pseudogene	Chr13:38200208-38200975 (+)
A/J	ENSMUSG00195035093	pseudogene	Chr13:37261112-37261879 (+)
AKR/J	ENSMUSG00220031472	pseudogene	Chr13:37047225-37047992 (+)
BALB/cJ	ENSMUSG00180008288	pseudogene	Chr13:37566547-37567314 (+)
C3H/HeJ	ENSMUSG00175014533	pseudogene	Chr13:37531445-37532212 (+)
C57BL/6NJ	ENSMUSG00215017901	pseudogene	Chr13:37671974-37672741 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009864	pseudogene	Chr13:36082060-36082694 (+)
CAST/EiJ	ENSTCUG00005036518	pseudogene	Chr13:37589575-37590342 (+)
CBA/J	ENSMUSG00210012084	pseudogene	Chr13:37537120-37537887 (+)
DBA/2J	ENSMUSG00185035061	pseudogene	Chr13:38331434-38332201 (+)
FVB/NJ	ENSMUSG00205035504	pseudogene	Chr13:37283509-37284276 (+)
JF1/MsJ	ENSUMUG00000035271	pseudogene	Chr13:37885832-37886608 (+)
LP/J	ENSMUSG00230017026	pseudogene	Chr13:47669387-47670154 (+)
NOD/ShiLtJ	ENSMUSG00190013057	pseudogene	Chr13:37734712-37735479 (+)
NZO/HlLtJ	ENSMUSG00225036653	pseudogene	Chr13:41445082-41445849 (+)
PWK/PhJ	ENSLUMG00010032899	pseudogene	Chr13:36721353-36722129 (+)
SPRET/EiJ	ENSMSPG00010011411	pseudogene	Chr13:36768038-36768814 (+)
WSB/EiJ	ENSIUOG00005029990	pseudogene	Chr13:36879207-36879974 (+)

Homology

• Gene Tree
  Gm6245
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm6245
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000090475 (Evidence)
• NCBI Gene
  621629

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090475	Ensembl Gene Model | MGI Sequence Detail	768	C57BL/6J
transcript	ENSMUST00000164699	Ensembl | MGI Sequence Detail	768	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14