Cbx3-ps6 Pseudogene Detail

Summary

• Symbol
  Cbx3-ps6
• Name
  chromobox 3, pseudogene 6
• Synonyms
  Gm6984

• Feature Type
  pseudogene
• IDs
  MGI:3646710
  NCBI Gene: 629578
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:74192440-74192991 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 39.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646710	pseudogene	Chr14:74191338-74193066 (-)
129S1/SvImJ	ENSMUSG00200011163	pseudogene	Chr14:62627880-62628431 (-)
A/J	ENSMUSG00195004256	pseudogene	Chr14:62762484-62763035 (-)
AKR/J	ENSMUSG00220007537	pseudogene	Chr14:62080165-62080716 (-)
BALB/cJ	ENSMUSG00180023798	pseudogene	Chr14:62368936-62369487 (-)
C3H/HeJ	ENSMUSG00175031797	pseudogene	Chr14:64104695-64105246 (-)
C57BL/6NJ	ENSMUSG00215026216	pseudogene	Chr14:62344361-62344912 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210010385	pseudogene	Chr14:62743345-62743896 (-)
DBA/2J	ENSMUSG00185024217	pseudogene	Chr14:67890074-67890625 (-)
FVB/NJ	ENSMUSG00205026057	pseudogene	Chr14:62188572-62189123 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230017561	pseudogene	Chr14:79978017-79978568 (-)
NOD/ShiLtJ	ENSMUSG00190011446	pseudogene	Chr14:62513052-62513603 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Cbx3-ps6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Cbx3-ps6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000057886 (Evidence)
• NCBI Gene
  629578

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057886	Ensembl Gene Model | MGI Sequence Detail	552	C57BL/6J
transcript	ENSMUST00000181108	Ensembl | MGI Sequence Detail	552	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;