Gm6983 Pseudogene Detail

Summary

• Symbol
  Gm6983
• Name
  predicted gene 6983

• Feature Type
  pseudogene
• IDs
  MGI:3646709
  NCBI Gene: 629573
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:44728710-44729337 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 23.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646709	pseudogene	Chr10:44728687-44729376 (+)
129S1/SvImJ	ENSMUSG00200007513	pseudogene	Chr10:41626606-41627233 (+)
A/J	ENSMUSG00195003247	pseudogene	Chr10:41896713-41897340 (+)
AKR/J	ENSMUSG00220006041	pseudogene	Chr10:41582580-41583207 (+)
BALB/cJ	ENSMUSG00180011819	pseudogene	Chr10:41985953-41986580 (+)
C3H/HeJ	ENSMUSG00175010309	pseudogene	Chr10:41773389-41774016 (+)
C57BL/6NJ	ENSMUSG00215002427	pseudogene	Chr10:41523430-41524057 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008820	pseudogene	Chr10:41973549-41974177 (+)
CBA/J	ENSMUSG00210008224	pseudogene	Chr10:41669015-41669642 (+)
DBA/2J	ENSMUSG00185003309	pseudogene	Chr10:41820561-41821188 (+)
FVB/NJ	ENSMUSG00205005236	pseudogene	Chr10:41743342-41743969 (+)
JF1/MsJ	ENSUMUG00000027837	pseudogene	Chr10:41657991-41658619 (+)
LP/J	ENSMUSG00230006082	pseudogene	Chr10:43624575-43625202 (+)
NOD/ShiLtJ	ENSMUSG00190005746	pseudogene	Chr10:41948751-41949378 (+)
NZO/HlLtJ	ENSMUSG00225019169	pseudogene	Chr10:47910379-47911006 (+)
PWK/PhJ	ENSLUMG00010004802	pseudogene	Chr10:41735792-41736420 (+)
SPRET/EiJ	ENSMSPG00010012851	pseudogene	Chr10:42793869-42794454 (+)
WSB/EiJ	ENSIUOG00005015298	pseudogene	Chr10:41498761-41499389 (+)

Homology

• Gene Tree
  Gm6983
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6983
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111671 (Evidence)
• NCBI Gene
  629573

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111671	Ensembl Gene Model | MGI Sequence Detail	628	C57BL/6J
transcript	ENSMUST00000214912	Ensembl | MGI Sequence Detail	628	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm6983:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93178	Chr10:44728685-44728686 (+)	-24 bp