Gm5621 Pseudogene Detail

Summary

• Symbol
  Gm5621
• Name
  predicted gene 5621

• Feature Type
  pseudogene
• IDs
  MGI:3646701
  NCBI Gene: 434434
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:105437321-105437960 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 56.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646701	pseudogene	Chr9:105437242-105438022 (-)
129S1/SvImJ	ENSMUSG00200044067	pseudogene	Chr9:102625607-102626246 (-)
A/J	ENSMUSG00195044670	pseudogene	Chr9:101850454-101851093 (-)
AKR/J	ENSMUSG00220029789	pseudogene	Chr9:102239974-102240613 (-)
BALB/cJ	ENSMUSG00180036684	pseudogene	Chr9:102166961-102167600 (-)
C3H/HeJ	ENSMUSG00175046315	pseudogene	Chr9:102509438-102510077 (-)
C57BL/6NJ	ENSMUSG00215042042	pseudogene	Chr9:102477970-102478609 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011528	pseudogene	Chr5:17864993-17865589 (+)
CAST/EiJ	ENSTCUG00005035126	pseudogene	Chr9:102289113-102289752 (-)
CBA/J	ENSMUSG00210046848	pseudogene	Chr9:102328770-102329409 (-)
DBA/2J	ENSMUSG00185044176	pseudogene	Chr9:102511683-102512322 (-)
FVB/NJ	ENSMUSG00205050723	pseudogene	Chr9:102490196-102490835 (-)
JF1/MsJ	ENSUMUG00000055068	pseudogene	Chr9:102331198-102331837 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190051255	pseudogene	Chr9:102152483-102153122 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010043192	pseudogene	Chr9:102282326-102282965 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005048098	pseudogene	Chr9:101561120-101561759 (-)

Homology

• Gene Tree
  Gm5621
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000101597 (Evidence)
• NCBI Gene
  434434

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101597	Ensembl Gene Model | MGI Sequence Detail	640	C57BL/6J
transcript	ENSMUST00000187303	Ensembl | MGI Sequence Detail	640	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5621:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91262	Chr9:105438003-105438012 (-)	-48 bp