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Gm5909 Pseudogene Detail
Summary
  • Symbol
    Gm5909
  • Name
    predicted gene 5909
Location &
Maps
more
  • Sequence Map
    Chr8:80837435-80838715 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 38.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    169 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646686
 pseudogene Chr8:80837046-80838797 (-)
129S1/SvImJ ENSMUSG00200026439
 pseudogene Chr8:75196443-75197723 (-)
A/J ENSMUSG00195020401
 pseudogene Chr8:75547591-75548871 (-)
AKR/J ENSMUSG00220023684
 pseudogene Chr8:75639380-75640660 (-)
BALB/cJ ENSMUSG00180021421
 pseudogene Chr8:75398671-75399951 (-)
C3H/HeJ ENSMUSG00175011326
 pseudogene Chr8:75477833-75479113 (-)
C57BL/6NJ ENSMUSG00215025726
 pseudogene Chr8:75114366-75115646 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0010512
 pseudogene Chr2:77995301-78001839 (+)
CAST/EiJ ENSTCUG00005037832
 pseudogene Chr8:75048165-75049445 (-)
CBA/J ENSMUSG00210020519
 pseudogene Chr8:75469900-75471180 (-)
DBA/2J ENSMUSG00185038006
 pseudogene Chr8:81579058-81580338 (-)
FVB/NJ ENSMUSG00205043049
 pseudogene Chr8:74563235-74564515 (-)
JF1/MsJ ENSUMUG00000039319
 pseudogene Chr8:83919747-83921027 (-)
LP/J ENSMUSG00230029327
 pseudogene Chr8:85197332-85198612 (-)
NOD/ShiLtJ ENSMUSG00190030721
 pseudogene Chr8:75536111-75537391 (-)
NZO/HlLtJ ENSMUSG00225023170
 pseudogene Chr8:88598330-88599610 (-)
PWK/PhJ ENSLUMG00010029387
 pseudogene Chr8:75328399-75329679 (-)
SPRET/EiJ ENSMSPG00010023681
 pseudogene Chr8:77101956-77103193 (-)
WSB/EiJ ENSIUOG00005016289
 pseudogene Chr8:76287291-76288571 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm5909
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082491 Ensembl Gene Model | MGI Sequence Detail 1281 C57BL/6J ±  kb
transcript ENSMUST00000119768 Ensembl | MGI Sequence Detail 1281 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 37
    Phenotypes 32
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
  • Latest
    J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory