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Alyreffm2 Pseudogene Detail
Summary
  • Symbol
    Alyreffm2
  • Name
    Aly/REF export factor family member 2
  • Synonyms
    Gm6489
Location &
Maps
more
  • Sequence Map
    Chr1:31326026-31326787 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 1, 11.59 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    79 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646684
pseudogene Chr1:31326026-31327132 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0010041
pseudogene Chr1:28835333-28837093 (+)
AKR/J MGP_AKRJ_G0010021
pseudogene Chr1:29161756-29162444 (+)
BALB/cJ MGP_BALBcJ_G0010027
pseudogene Chr1:28544041-28544682 (+)
C3H/HeJ MGP_C3HHeJ_G0009960
pseudogene Chr1:29328892-29329533 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0009038
pseudogene Chr1:25649129-25649757 (+)
CAST/EiJ MGP_CASTEiJ_G0009865
pseudogene Chr1:48810975-48811602 (-)
CBA/J MGP_CBAJ_G0009932
pseudogene Chr1:31724946-31725587 (+)
DBA/2J MGP_DBA2J_G0009952
pseudogene Chr1:27948255-27948899 (-)
FVB/NJ MGP_FVBNJ_G0009977
pseudogene Chr1:27511788-27512432 (-)
LP/J MGP_LPJ_G0010043
pseudogene Chr1:29471570-29472265 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0010426
pseudogene Chr10:111092375-111093059 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0010252
pseudogene Chr1:29111347-29112042 (+)
PWK/PhJ MGP_PWKPhJ_G0009703
pseudogene Chr1:27609497-27610326 (-)
SPRET/EiJ MGP_SPRETEiJ_G0009582
pseudogene Chr1:48605467-48606094 (+)
WSB/EiJ MGP_WSBEiJ_G0009931
pseudogene Chr1:48891764-48892433 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000094215 Ensembl Gene Model | MGI Sequence Detail 762 C57BL/6J ±  kb
transcript ENSMUST00000178167 Ensembl | MGI Sequence Detail 762 Not Applicable  
polypeptide ENSMUSP00000159554 Ensembl | MGI Sequence Detail 253 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR051229 ALYREF mRNA export adapter
    IPR025715 Chromatin target of PRMT1 protein, C-terminal
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
Other
Accession IDs
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MGI:7595544
References
more
  • Summaries
    All 8
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:161428 Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas, Annotation inferences using phylogenetic trees. 2010;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
11/19/2024
MGI 6.24
The Jackson Laboratory