Gm5178 Pseudogene Detail

Summary

• Symbol
  Gm5178
• Name
  predicted gene 5178

• Feature Type
  pseudogene
• IDs
  MGI:3646661
  NCBI Gene: 382457
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:16299921-16300818 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 6.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  317 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646661	pseudogene	Chr10:16299718-16300871 (-)
129S1/SvImJ	ENSMUSG00200010679	pseudogene	Chr10:13297421-13298318 (-)
A/J	ENSMUSG00195006836	pseudogene	Chr10:13279610-13280507 (-)
AKR/J	ENSMUSG00220010235	pseudogene	Chr10:13218195-13219052 (-)
BALB/cJ	ENSMUSG00180016041	pseudogene	Chr10:13410640-13411537 (-)
C3H/HeJ	ENSMUSG00175020965	pseudogene	Chr10:13427494-13428391 (-)
C57BL/6NJ	ENSMUSG00215003997	pseudogene	Chr10:13250714-13251611 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031886	pseudogene	Chr10:13201099-13201988 (-)
CBA/J	ENSMUSG00210015883	pseudogene	Chr10:13359182-13360079 (-)
DBA/2J	ENSMUSG00185007583	pseudogene	Chr10:13352682-13353579 (-)
FVB/NJ	ENSMUSG00205018475	pseudogene	Chr10:13276881-13277778 (-)
JF1/MsJ	ENSUMUG00000014488	pseudogene	Chr10:13419787-13420674 (-)
LP/J	ENSMUSG00230019176	pseudogene	Chr10:15009297-15010194 (-)
NOD/ShiLtJ	ENSMUSG00190011220	pseudogene	Chr10:13357408-13358265 (-)
NZO/HlLtJ	ENSMUSG00225016403	pseudogene	Chr10:19516410-19517307 (-)
PWK/PhJ	ENSLUMG00010015594	pseudogene	Chr10:13151902-13152789 (-)
SPRET/EiJ	ENSMSPG00010011521	pseudogene	Chr10:13687134-13688031 (-)
WSB/EiJ	ENSIUOG00005023044	pseudogene	Chr10:12952830-12953727 (-)

Homology

• Gene Tree
  Gm5178
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112123 (Evidence)
• NCBI Gene
  382457

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112123	Ensembl Gene Model | MGI Sequence Detail	898	C57BL/6J
transcript	ENSMUST00000219380	Ensembl | MGI Sequence Detail	898	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5178:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96810	Chr10:16300865-16300875 (-)	-52 bp