Gm6576 Pseudogene Detail

Summary

• Symbol
  Gm6576
• Name
  predicted gene 6576

• Feature Type
  pseudogene
• IDs
  MGI:3646644
  NCBI Gene: 625311
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:27025414-27026296 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 9.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646644	pseudogene	Chr15:27025388-27026343 (+)
129S1/SvImJ	ENSMUSG00200027654	pseudogene	Chr15:24032802-24033684 (+)
A/J	ENSMUSG00195014133	pseudogene	Chr15:23985446-23986328 (+)
AKR/J	ENSMUSG00220047269	pseudogene	Chr15:23839300-23840182 (+)
BALB/cJ	ENSMUSG00180005432	pseudogene	Chr15:23919160-23920042 (+)
C3H/HeJ	ENSMUSG00175004791	pseudogene	Chr15:24074964-24075846 (+)
C57BL/6NJ	ENSMUSG00215005522	pseudogene	Chr15:23975243-23976125 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031727	protein coding gene	Chr8:117461808-117462600 (+)
CAST/EiJ	ENSTCUG00005015109	pseudogene	Chr15:24034185-24035063 (+)
CBA/J	ENSMUSG00210024633	pseudogene	Chr15:24021728-24022610 (+)
DBA/2J	ENSMUSG00185023990	pseudogene	Chr15:24014321-24015203 (+)
FVB/NJ	ENSMUSG00205014610	pseudogene	Chr15:23967618-23968500 (+)
JF1/MsJ	ENSUMUG00000014554	pseudogene	Chr15:24014312-24014704 (+)
LP/J	ENSMUSG00230016079	pseudogene	Chr15:27502350-27503232 (+)
NOD/ShiLtJ	ENSMUSG00190012208	pseudogene	Chr15:23992838-23993720 (+)
NZO/HlLtJ	ENSMUSG00225031876	pseudogene	Chr15:27735164-27736046 (+)
PWK/PhJ	ENSLUMG00010022475	pseudogene	Chr15:24156666-24157544 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005020981	pseudogene	Chr15:24032728-24033610 (+)

Homology

• Gene Tree
  Gm6576
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm6576
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090544 (Evidence)
• NCBI Gene
  625311

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090544	Ensembl Gene Model | MGI Sequence Detail	883	C57BL/6J
transcript	ENSMUST00000169678	Ensembl | MGI Sequence Detail	883	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm6576:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130879	Chr15:27025382-27025384 (+)	-31 bp