Btf3-ps6 Pseudogene Detail

Summary

• Symbol
  Btf3-ps6
• Name
  basic transcription factor 3, pseudogene 6
• Synonyms
  Gm5314

• Feature Type
  pseudogene
• IDs
  MGI:3646639
  NCBI Gene: 384466
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:99747618-99748083 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 46.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646639	pseudogene	Chr6:99739480-99748229 (+)
129S1/SvImJ	ENSMUSG00200020666	pseudogene	Chr6:96744495-96744960 (+)
A/J	ENSMUSG00195002159	pseudogene	Chr6:96443229-96443694 (+)
AKR/J	ENSMUSG00220022629	pseudogene	Chr6:95359213-95359678 (+)
BALB/cJ	ENSMUSG00180010062	pseudogene	Chr6:96827546-96828011 (+)
C3H/HeJ	ENSMUSG00175016500	pseudogene	Chr6:80598890-80599355 (-)
C57BL/6NJ	ENSMUSG00215012844	pseudogene	Chr6:96824066-96824531 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001397	pseudogene	Chr6:96831693-96832158 (+)
CBA/J	ENSMUSG00210004129	pseudogene	Chr6:96633270-96633735 (+)
DBA/2J	ENSMUSG00185026367	pseudogene	Chr6:97115016-97115481 (+)
FVB/NJ	ENSMUSG00205012684	pseudogene	Chr6:95822717-95823182 (+)
JF1/MsJ	ENSUMUG00000002386	pseudogene	Chr6:95986700-95987165 (+)
LP/J	ENSMUSG00230013317	pseudogene	Chr6:98287208-98287673 (+)
NOD/ShiLtJ	ENSMUSG00190002966	pseudogene	Chr6:96287772-96288237 (+)
NZO/HlLtJ	ENSMUSG00225040383	pseudogene	Chr6:100288838-100289303 (+)
PWK/PhJ	ENSLUMG00010016118	pseudogene	Chr6:95437105-95437570 (+)
SPRET/EiJ	ENSMSPG00010018776	pseudogene	Chr6:97828516-97828980 (+)
WSB/EiJ	ENSIUOG00005002837	pseudogene	Chr6:97215433-97215898 (+)

Homology

• Gene Tree
  Btf3-ps6
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108082 (Evidence)
• NCBI Gene
  384466

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108082	Ensembl Gene Model | MGI Sequence Detail	466	C57BL/6J
transcript	ENSMUST00000204852	Ensembl | MGI Sequence Detail	466	Not Applicable

Other
Accession IDs

MGI:6450945

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Btf3-ps6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57985	Chr6:99747486-99747489 (+)	-130 bp