Cdv3-ps Pseudogene Detail

Summary

• Symbol
  Cdv3-ps
• Name
  Cdv3 retrotransposed pseudogene
• Synonyms
  Gm7236

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646628
  NCBI Gene: 102639170
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:42978394-42979928 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646628	pseudogene	Chr14:42978301-42983468 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185016251	pseudogene	Chr14:37697126-37698404 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000033511	pseudogene	Chr14:46972699-46974234 (+)
LP/J	ENSMUSG00230022517	pseudogene	Chr14:50679744-50681281 (+)
LP/J	ENSMUSG00230021969	pseudogene	Chr14:46428560-46430095 (+)
LP/J	ENSMUSG00230022496	pseudogene	Chr14:50241970-50243469 (+)
LP/J	ENSMUSG00230022469	pseudogene	Chr14:49298906-49300441 (+)
LP/J	ENSMUSG00230022312	pseudogene	Chr14:46001602-46003134 (+)
LP/J	ENSMUSG00230022278	pseudogene	Chr14:45254539-45256075 (-)
LP/J	ENSMUSG00230022390	pseudogene	Chr14:47452792-47460867 (+)
LP/J	ENSMUSG00230022441	pseudogene	Chr14:48328421-48329955 (+)
LP/J	ENSMUSG00230022404	pseudogene	Chr14:47662813-47664343 (+)
LP/J	ENSMUSG00230022410	pseudogene	Chr14:47879728-47881240 (+)
LP/J	ENSMUSG00230022295	pseudogene	Chr14:45640940-45642472 (-)
NOD/ShiLtJ	ENSMUSG00190045656	pseudogene	Chr14:33408743-33410216 (+)
NZO/HlLtJ	ENSMUSG00225042369	pseudogene	Chr14:39339698-39341210 (-)
NZO/HlLtJ	ENSMUSG00225042385	pseudogene	Chr14:39544742-39546274 (-)
NZO/HlLtJ	ENSMUSG00225042422	pseudogene	Chr14:39905415-39906947 (+)
NZO/HlLtJ	ENSMUSG00225042432	pseudogene	Chr14:40915253-40916790 (+)
NZO/HlLtJ	ENSMUSG00225042201	pseudogene	Chr14:40332202-40333737 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Cdv3-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Cdv3-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000090389 (Evidence)
• NCBI Gene
  102639170

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090389	Ensembl Gene Model | MGI Sequence Detail	1535	C57BL/6J
transcript	ENSMUST00000169632	Ensembl | MGI Sequence Detail	827	Not Applicable
polypeptide	XP_036014922	RefSeq | MGI Sequence Detail	274	C57BL/6J

Other
Accession IDs

MGI:5827767

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Cdv3-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128215	Chr14:42978612-42978615 (-)	1,314 bp