Rpl38-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl38-ps2
• Name
  ribosomal protein L38, pseudogene 2
• Synonyms
  Gm7379

• Feature Type
  pseudogene
• IDs
  MGI:3646625
  NCBI Gene: 664868
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:140692686-140692898 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 70.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646625	pseudogene	Chr6:140692645-140692942 (-)
129S1/SvImJ	ENSMUSG00200033512	pseudogene	Chr6:138231995-138232207 (-)
A/J	ENSMUSG00195008536	pseudogene	Chr6:137137735-137137947 (-)
AKR/J	ENSMUSG00220033693	pseudogene	Chr6:135368665-135368877 (-)
BALB/cJ	ENSMUSG00180017227	pseudogene	Chr6:137230518-137230730 (-)
C3H/HeJ	ENSMUSG00175035950	pseudogene	Chr6:137165314-137165526 (-)
C57BL/6NJ	ENSMUSG00215027114	pseudogene	Chr6:137335844-137336056 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210005322	pseudogene	Chr6:137227263-137227475 (-)
DBA/2J	ENSMUSG00185023363	pseudogene	Chr6:137878048-137878260 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000011775	pseudogene	Chr6:136539557-136539769 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190006986	pseudogene	Chr6:137715936-137716148 (-)
NZO/HlLtJ	ENSMUSG00225007657	pseudogene	Chr6:141868103-141868315 (-)
PWK/PhJ	ENSLUMG00010034947	pseudogene	Chr6:135629162-135629374 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl38-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000080921 (Evidence)
• NCBI Gene
  664868

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080921	Ensembl Gene Model | MGI Sequence Detail	213	C57BL/6J
transcript	ENSMUST00000117356	Ensembl | MGI Sequence Detail	213	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:80507 Waterston RH, et al., Initial sequencing and comparative analysis of the mouse genome. Nature. 2002 Dec 5;420(6915):520-62
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rpl38-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63928	Chr6:140692937-140692952 (-)	-47 bp