Tmem41b-ps Pseudogene Detail

Summary

• Symbol
  Tmem41b-ps
• Name
  transmembrane protein 41B, pseudogene
• Synonyms
  Gm6223

• Feature Type
  pseudogene
• IDs
  MGI:3646615
  NCBI Gene: 621414
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:90000990-90001860 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 47.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646615	pseudogene	Chr9:90000932-90003216 (+)
129S1/SvImJ	ENSMUSG00200005918	pseudogene	Chr9:87124858-87125728 (+)
A/J	ENSMUSG00195007438	pseudogene	Chr9:86392259-86393129 (+)
AKR/J	ENSMUSG00220020268	pseudogene	Chr9:86809251-86810121 (+)
BALB/cJ	ENSMUSG00180007680	pseudogene	Chr9:86718848-86719718 (+)
C3H/HeJ	ENSMUSG00175004875	pseudogene	Chr9:87030324-87031194 (+)
C57BL/6NJ	ENSMUSG00215010123	pseudogene	Chr9:87008642-87009512 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210006548	pseudogene	Chr9:86881001-86881871 (+)
DBA/2J	ENSMUSG00185002022	pseudogene	Chr9:87028552-87029422 (+)
FVB/NJ	ENSMUSG00205005271	pseudogene	Chr9:87197968-87198838 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230010308	pseudogene	Chr9:87231351-87232221 (+)
NOD/ShiLtJ	ENSMUSG00190011461	pseudogene	Chr9:86674863-86675733 (+)
NZO/HlLtJ	ENSMUSG00225016183	pseudogene	Chr9:87329430-87330300 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005003979	pseudogene	Chr9:86061306-86062176 (+)

Homology

• Gene Tree
  Tmem41b-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Tmem41b-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000096647 (Evidence)
• NCBI Gene
  621414

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096647	Ensembl Gene Model | MGI Sequence Detail	871	C57BL/6J
transcript	ENSMUST00000178436	Ensembl | MGI Sequence Detail	871	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

Other
Accession IDs

MGI:6362755

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;