Gm5396 Pseudogene Detail

Summary

• Symbol
  Gm5396
• Name
  predicted pseudogene 5396

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646589
  NCBI Gene: 385454
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:151895919-151896450 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646589	pseudogene	ChrX:151895892-151896458 (-)
129S1/SvImJ	ENSMUSG00200033314	pseudogene	ChrX:128684492-128685023 (-)
A/J	ENSMUSG00195022170	pseudogene	ChrX:133689750-133690281 (-)
AKR/J	ENSMUSG00220036497	pseudogene	ChrX:125646312-125646843 (-)
BALB/cJ	ENSMUSG00180041155	pseudogene	ChrX:129065497-129066028 (-)
C3H/HeJ	ENSMUSG00175031972	pseudogene	ChrX:133634589-133635120 (-)
C57BL/6NJ	ENSMUSG00215030574	pseudogene	ChrX:129387668-129388199 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012999	pseudogene	ChrX:141771834-141772370 (-)
CAST/EiJ	ENSTCUG00005036684	pseudogene	ChrX:131400734-131401268 (-)
CBA/J	ENSMUSG00210034041	pseudogene	ChrX:131088461-131088992 (-)
DBA/2J	ENSMUSG00185045771	pseudogene	ChrX:145909930-145910461 (-)
FVB/NJ	ENSMUSG00205028283	pseudogene	ChrX:129607873-129608404 (-)
JF1/MsJ	ENSUMUG00000045871	pseudogene	ChrX:166081549-166082083 (-)
LP/J	ENSMUSG00230013660	pseudogene	ChrX:152693291-152693822 (-)
NOD/ShiLtJ	ENSMUSG00190038012	pseudogene	ChrX:130126947-130127478 (-)
NZO/HlLtJ	ENSMUSG00225042259	pseudogene	ChrX:156189696-156190227 (-)
PWK/PhJ	ENSLUMG00010036003	pseudogene	ChrX:127598363-127598897 (-)
SPRET/EiJ	ENSMSPG00010040747	pseudogene	ChrX:132465723-132466257 (-)
WSB/EiJ	ENSIUOG00005040387	pseudogene	ChrX:130561343-130561874 (-)

Homology

• Gene Tree
  Gm5396
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000084275 (Evidence)
• NCBI Gene
  385454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084275	Ensembl Gene Model | MGI Sequence Detail	532	C57BL/6J
transcript	ENSMUST00000121222	Ensembl | MGI Sequence Detail	532	Not Applicable
polypeptide	XP_036018032	RefSeq | MGI Sequence Detail	188	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;