Gm5973 Pseudogene Detail

Summary

• Symbol
  Gm5973
• Name
  predicted gene 5973

• Feature Type
  pseudogene
• IDs
  MGI:3646541
  NCBI Gene: 546733
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:40902897-40903392 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 20.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646541	pseudogene	Chr1:40902699-40903399 (-)
129S1/SvImJ	ENSMUSG00200004719	pseudogene	Chr1:38505698-38506193 (-)
A/J	ENSMUSG00195044527	pseudogene	Chr1:38185464-38185959 (-)
AKR/J	ENSMUSG00220009866	pseudogene	Chr1:38170493-38170988 (-)
BALB/cJ	ENSMUSG00180012588	pseudogene	Chr1:38243044-38243539 (-)
C3H/HeJ	ENSMUSG00175001599	pseudogene	Chr1:38188374-38188869 (-)
C57BL/6NJ	ENSMUSG00215033193	pseudogene	Chr1:38218198-38218693 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009075	pseudogene	Chr1:35463285-35463781 (-)
CAST/EiJ	ENSTCUG00005003350	pseudogene	Chr1:38268498-38268993 (-)
CBA/J	ENSMUSG00210006473	pseudogene	Chr1:37979740-37980235 (-)
DBA/2J	ENSMUSG00185011495	pseudogene	Chr1:39082017-39082512 (-)
FVB/NJ	ENSMUSG00205040802	pseudogene	Chr1:38185306-38185801 (-)
JF1/MsJ	ENSUMUG00000030400	pseudogene	Chr1:38290934-38291429 (-)
LP/J	ENSMUSG00230026641	pseudogene	Chr1:39109997-39110492 (-)
NOD/ShiLtJ	ENSMUSG00190040444	pseudogene	Chr1:38194573-38195068 (-)
NZO/HlLtJ	ENSMUSG00225000561	pseudogene	Chr1:42366500-42366995 (-)
PWK/PhJ	ENSLUMG00010035873	pseudogene	Chr1:37806207-37806702 (-)
SPRET/EiJ	ENSMSPG00010030470	pseudogene	Chr1:39298728-39299223 (-)
WSB/EiJ	ENSIUOG00005041519	pseudogene	Chr1:38110941-38111436 (-)

Homology

• Gene Tree
  Gm5973
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5973
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000094136 (Evidence)
• NCBI Gene
  546733

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094136	Ensembl Gene Model | MGI Sequence Detail	496	C57BL/6J
transcript	ENSMUST00000178542	Ensembl | MGI Sequence Detail	496	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;