Gm5976 Pseudogene Detail

Summary

• Symbol
  Gm5976
• Name
  predicted gene 5976

• Feature Type
  pseudogene
• IDs
  MGI:3646538
  NCBI Gene: 546736
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:52542393-52543388 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 26.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646538	pseudogene	Chr1:52542188-52543405 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010133	pseudogene	Chr1:52014678-52015760 (-)
A/J	MGP_AJ_G0010121	pseudogene	Chr1:50268754-50269749 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010109	pseudogene	Chr1:50093122-50094121 (-)
C3H/HeJ	MGP_C3HHeJ_G0010038	pseudogene	Chr1:51738404-51739399 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009097	pseudogene	Chr1:41588699-41589665 (+)
CAST/EiJ	MGP_CASTEiJ_G0009872	pseudogene	Chr1:51227702-51228703 (-)
CBA/J	MGP_CBAJ_G0010008	pseudogene	Chr1:55641645-55642660 (-)
DBA/2J	MGP_DBA2J_G0010035	pseudogene	Chr1:49538733-49539705 (-)
FVB/NJ	MGP_FVBNJ_G0010058	pseudogene	Chr1:49001027-49002006 (-)
LP/J	MGP_LPJ_G0010124	pseudogene	Chr1:52496934-52497935 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010018	pseudogene	Chr1:58701887-58702882 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010335	pseudogene	Chr1:51458913-51459908 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0009592	pseudogene	Chr1:51123962-51124961 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5976
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5976
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000097833 (Evidence)
• NCBI Gene
  546736

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097833	Ensembl Gene Model | MGI Sequence Detail	996	C57BL/6J
transcript	ENSMUST00000180794	Ensembl | MGI Sequence Detail	996	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm5976:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11607	Chr1:52543458-52543459 (-)	-71 bp