Gm5650 Pseudogene Detail

Summary

• Symbol
  Gm5650
• Name
  predicted gene 5650

• Feature Type
  pseudogene
• IDs
  MGI:3646505
  NCBI Gene: 435235
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:137663685-137664236 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 82.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646505	pseudogene	Chr7:137663685-137664332 (+)
129S1/SvImJ	ENSMUSG00200047318	pseudogene	Chr7:124219620-124220217 (+)
A/J	ENSMUSG00195041625	pseudogene	Chr7:128690294-128690891 (+)
AKR/J	ENSMUSG00220016948	pseudogene	Chr7:122179030-122179627 (+)
BALB/cJ	ENSMUSG00180040766	pseudogene	Chr7:125394094-125394691 (+)
C3H/HeJ	ENSMUSG00175041825	pseudogene	Chr7:126122393-126122990 (+)
C57BL/6NJ	ENSMUSG00215048783	pseudogene	Chr7:125395861-125396458 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051103	pseudogene	Chr7:128678439-128678559 (+)
CBA/J	ENSMUSG00210030984	pseudogene	Chr7:125870765-125871362 (+)
DBA/2J	ENSMUSG00185024336	pseudogene	Chr7:130171434-130172032 (+)
FVB/NJ	ENSMUSG00205045019	pseudogene	Chr7:125845505-125846102 (+)
JF1/MsJ	ENSUMUG00000048488	pseudogene	Chr7:135238962-135239044 (+)
LP/J	ENSMUSG00230043810	pseudogene	Chr7:136322714-136323311 (+)
NOD/ShiLtJ	ENSMUSG00190033431	pseudogene	Chr7:125995842-125995924 (+)
NZO/HlLtJ	ENSMUSG00225052691	pseudogene	Chr7:134551149-134551746 (+)
PWK/PhJ	ENSLUMG00010049452	pseudogene	Chr7:124399283-124399882 (+)
SPRET/EiJ	ENSMSPG00010045362	pseudogene	Chr7:125734910-125735031 (+)
WSB/EiJ	ENSIUOG00005035796	pseudogene	Chr7:126702105-126702228 (+)

Homology

• Gene Tree
  Gm5650
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109834 (Evidence)
• NCBI Gene
  435235

Representative Sequences			Length	Strain/Species
genomic	435235	NCBI Gene Model | MGI Sequence Detail	552	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;