Gm7435 Pseudogene Detail

Summary

• Symbol
  Gm7435
• Name
  predicted gene 7435

• Feature Type
  pseudogene
• IDs
  MGI:3646489
  NCBI Gene: 664980
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:55857270-55859693 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 30.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646489	pseudogene	Chr9:55857238-55859704 (+)
129S1/SvImJ	ENSMUSG00200035759	pseudogene	Chr9:52969026-52983280 (+)
A/J	ENSMUSG00195042628	pseudogene	Chr9:52667641-52681875 (+)
AKR/J	ENSMUSG00220032473	pseudogene	Chr9:52804811-52819048 (+)
BALB/cJ	ENSMUSG00180019660	pseudogene	Chr9:52784620-52798950 (+)
C3H/HeJ	ENSMUSG00175022097	pseudogene	Chr9:52794567-52808803 (+)
C57BL/6NJ	ENSMUSG00215036459	pseudogene	Chr9:52778016-52792344 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021847	pseudogene	Chr9:52675499-52689871 (+)
CBA/J	ENSMUSG00210042623	pseudogene	Chr9:52893214-52907520 (+)
DBA/2J	ENSMUSG00185043197	pseudogene	Chr9:52924989-52939243 (+)
FVB/NJ	ENSMUSG00205043425	pseudogene	Chr9:53234134-53248442 (+)
JF1/MsJ	ENSUMUG00000049733	pseudogene	Chr9:52912356-52928087 (+)
LP/J	ENSMUSG00230039305	pseudogene	Chr9:53168970-53183226 (+)
NOD/ShiLtJ	ENSMUSG00190045041	pseudogene	Chr9:52989625-53003931 (+)
NZO/HlLtJ	ENSMUSG00225028734	pseudogene	Chr9:53197278-53211580 (+)
PWK/PhJ	ENSLUMG00010039775	pseudogene	Chr9:52886603-52902358 (+)
SPRET/EiJ	ENSMSPG00010028034	pseudogene	Chr9:53918737-53931780 (+)
WSB/EiJ	ENSIUOG00005041924	pseudogene	Chr9:52402546-52416815 (+)

Homology

• Gene Tree
  Gm7435
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111662 (Evidence)
• NCBI Gene
  664980

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111662	Ensembl Gene Model | MGI Sequence Detail	2424	C57BL/6J
transcript	ENSMUST00000216003	Ensembl | MGI Sequence Detail	2424	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7435:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85224	Chr9:55855460-55855469 (+)	-1,805 bp