Gm6787 Gene Detail

Summary

• Symbol
  Gm6787
• Name
  predicted gene 6787

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3646481
  NCBI Gene: 627782
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:7963326-7972940 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  247 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646481	lncRNA gene	ChrX:7962825-7972945 (+)
129S1/SvImJ	ENSMUSG00200034640	lncRNA gene	ChrX:2663830-2674258 (+)
A/J	ENSMUSG00195041950	lncRNA gene	ChrX:2686984-2697138 (+)
AKR/J	ENSMUSG00220036792	lncRNA gene	ChrX:2674416-2685081 (+)
BALB/cJ	ENSMUSG00180031162	lncRNA gene	ChrX:2684697-2694913 (+)
C3H/HeJ	ENSMUSG00175034131	lncRNA gene	ChrX:2698629-2708820 (+)
C57BL/6NJ	ENSMUSG00215040953	lncRNA gene	ChrX:3362504-3372626 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013887	unclassified non-coding RNA gene	ChrX:2243567-2254826 (+)
CAST/EiJ	ENSTCUG00005034757	lncRNA gene	ChrX:2633023-2643440 (+)
CBA/J	ENSMUSG00210039452	lncRNA gene	ChrX:2715523-2725681 (+)
DBA/2J	ENSMUSG00185029215	lncRNA gene	ChrX:9332649-9342808 (+)
FVB/NJ	ENSMUSG00205035735	lncRNA gene	ChrX:2709290-2719645 (+)
JF1/MsJ	ENSUMUG00000042641	lncRNA gene	ChrX:23220205-23229934 (+)
LP/J	ENSMUSG00230033636	lncRNA gene	ChrX:13852587-13863072 (+)
NOD/ShiLtJ	ENSMUSG00190044869	lncRNA gene	ChrX:2689265-2699846 (+)
NZO/HlLtJ	ENSMUSG00225046184	lncRNA gene	ChrX:19118370-19128692 (+)
PWK/PhJ	ENSLUMG00010035484	lncRNA gene	ChrX:2681975-2692364 (+)
SPRET/EiJ	ENSMSPG00010027078	lncRNA gene	ChrX:2718929-2729053 (+)
WSB/EiJ	ENSIUOG00005032768	lncRNA gene	ChrX:15828236-15838617 (-)

Homology

• Gene Tree
  Gm6787
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000086404 (Evidence)
• NCBI Gene
  627782

Representative Sequences			Length	Strain/Species
genomic	627782	NCBI Gene Model | MGI Sequence Detail	9615	C57BL/6J
transcript	NR_003632	RefSeq | MGI Sequence Detail	1472	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 3

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9