Gm5249 Pseudogene Detail

Summary

• Symbol
  Gm5249
• Name
  predicted gene 5249

• Feature Type
  pseudogene
• IDs
  MGI:3646471
  NCBI Gene: 383474
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:25471201-25471927 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 20.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646471	pseudogene	Chr19:25471197-25474080 (+)
129S1/SvImJ	ENSMUSG00200020855	pseudogene	Chr19:22202915-22203641 (+)
A/J	ENSMUSG00195036097	pseudogene	Chr19:22346407-22347133 (+)
AKR/J	ENSMUSG00220019553	pseudogene	Chr19:22384371-22385097 (+)
BALB/cJ	ENSMUSG00180013573	pseudogene	Chr19:22684382-22685108 (+)
C3H/HeJ	ENSMUSG00175026377	pseudogene	Chr19:22056980-22057706 (+)
C57BL/6NJ	ENSMUSG00215030014	pseudogene	Chr19:22082893-22083619 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018417	pseudogene	Chr19:21944713-21945442 (+)
CBA/J	ENSMUSG00210015127	pseudogene	Chr19:22287970-22288696 (+)
DBA/2J	ENSMUSG00185026007	pseudogene	Chr19:22674610-22675336 (+)
FVB/NJ	ENSMUSG00205013975	pseudogene	Chr19:22102741-22103467 (+)
JF1/MsJ	ENSUMUG00000040042	pseudogene	Chr19:22883951-22884684 (+)
LP/J	ENSMUSG00230029399	pseudogene	Chr19:23512431-23513157 (+)
NOD/ShiLtJ	ENSMUSG00190022722	pseudogene	Chr19:22055507-22056233 (+)
NZO/HlLtJ	ENSMUSG00225034460	pseudogene	Chr19:27263265-27263991 (+)
PWK/PhJ	ENSLUMG00010035703	pseudogene	Chr19:22224582-22225325 (+)
SPRET/EiJ	ENSMSPG00010039179	pseudogene	Chr19:22241397-22242122 (+)
WSB/EiJ	ENSIUOG00005028866	pseudogene	Chr19:21767500-21768226 (+)

Homology

• Gene Tree
  Gm5249
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  35 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117720 (Evidence)
• NCBI Gene
  383474

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117720	Ensembl Gene Model | MGI Sequence Detail	727	C57BL/6J
transcript	ENSMUST00000238117	Ensembl | MGI Sequence Detail	545	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14