Gm5497 Pseudogene Detail

Summary

• Symbol
  Gm5497
• Name
  predicted gene 5497

• Feature Type
  pseudogene
• IDs
  MGI:3646432
  NCBI Gene: 433131
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:63877898-63878243 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 32.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646432	pseudogene	Chr17:63877895-63878445 (+)
129S1/SvImJ	ENSMUSG00200017007	pseudogene	Chr17:59195029-59195374 (+)
A/J	ENSMUSG00195007175	pseudogene	Chr17:60554537-60554882 (+)
AKR/J	ENSMUSG00220013608	pseudogene	Chr17:59635415-59635760 (+)
BALB/cJ	ENSMUSG00180006430	pseudogene	Chr17:60298463-60298808 (+)
C3H/HeJ	ENSMUSG00175007817	pseudogene	Chr17:59615397-59615742 (+)
C57BL/6NJ	ENSMUSG00215009872	pseudogene	Chr17:59264460-59264805 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019357	pseudogene	Chr17:60242329-60242674 (+)
CBA/J	ENSMUSG00210029503	pseudogene	Chr17:59407683-59408028 (+)
DBA/2J	ENSMUSG00185023841	pseudogene	Chr17:62254512-62254857 (+)
FVB/NJ	ENSMUSG00205007519	pseudogene	Chr17:59892489-59892834 (+)
JF1/MsJ	ENSUMUG00000040480	pseudogene	Chr17:61925365-61925710 (+)
LP/J	ENSMUSG00230017775	pseudogene	Chr17:63237564-63237909 (+)
NOD/ShiLtJ	ENSMUSG00190011474	pseudogene	Chr17:59391189-59391534 (+)
NZO/HlLtJ	ENSMUSG00225026481	pseudogene	Chr17:65517052-65517397 (+)
PWK/PhJ	ENSLUMG00010009849	pseudogene	Chr17:59189940-59190285 (+)
SPRET/EiJ	ENSMSPG00010005878	pseudogene	Chr17:59566089-59566432 (+)
WSB/EiJ	ENSIUOG00005024459	pseudogene	Chr17:60217150-60217495 (+)

Homology

• Gene Tree
  Gm5497
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117256 (Evidence)
• NCBI Gene
  433131

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117256	Ensembl Gene Model | MGI Sequence Detail	346	C57BL/6J
transcript	ENSMUST00000233628	Ensembl | MGI Sequence Detail	346	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;