Gm6181 Pseudogene Detail

Summary

• Symbol
  Gm6181
• Name
  predicted pseudogene 6181

• Feature Type
  pseudogene
• IDs
  MGI:3646422
  NCBI Gene: 620782
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:52405213-52405476 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646422	pseudogene	Chr7:52405157-52405594 (+)
129S1/SvImJ	ENSMUSG00200034234	pseudogene	Chr7:40006939-40007202 (+)
A/J	ENSMUSG00195011136	pseudogene	Chr7:44013813-44014076 (+)
AKR/J	ENSMUSG00220009637	pseudogene	Chr7:38301850-38302113 (+)
BALB/cJ	ENSMUSG00180010772	pseudogene	Chr7:40910631-40910894 (+)
C3H/HeJ	ENSMUSG00175003619	pseudogene	Chr7:41457384-41457647 (+)
C57BL/6NJ	ENSMUSG00215002240	pseudogene	Chr7:40714061-40714324 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210017615	pseudogene	Chr7:41794758-41795021 (+)
DBA/2J	ENSMUSG00185029144	pseudogene	Chr7:45721007-45721270 (+)
FVB/NJ	ENSMUSG00205001466	pseudogene	Chr7:41455977-41456240 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230006689	pseudogene	Chr7:51228398-51228661 (+)
NOD/ShiLtJ	ENSMUSG00190003605	pseudogene	Chr7:41796958-41797221 (+)
NZO/HlLtJ	ENSMUSG00225020329	pseudogene	Chr7:49414824-49415087 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010044808	pseudogene	Chr7:40436810-40437078 (+)
WSB/EiJ	ENSIUOG00005005570	pseudogene	Chr7:42107487-42107750 (+)

Homology

• Gene Tree
  Gm6181
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000074092 (Evidence)
• NCBI Gene
  620782

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074092	Ensembl Gene Model | MGI Sequence Detail	264	C57BL/6J
transcript	ENSMUST00000117187	Ensembl | MGI Sequence Detail	264	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm6181:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66903	Chr7:52405149-52405163 (+)	-57 bp