Gm5297 Pseudogene Detail

Summary

• Symbol
  Gm5297
• Name
  predicted gene 5297

• Feature Type
  pseudogene
• IDs
  MGI:3646414
  NCBI Gene: 384275
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:72784201-72785371 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 38.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646414	pseudogene	Chr5:72784103-72785373 (-)
129S1/SvImJ	ENSMUSG00200036666	pseudogene	Chr5:68441519-68442691 (-)
A/J	ENSMUSG00195033503	pseudogene	Chr5:67765745-67766918 (-)
AKR/J	ENSMUSG00220004460	pseudogene	Chr5:67877394-67878566 (-)
BALB/cJ	ENSMUSG00180024103	pseudogene	Chr5:67522743-67523919 (-)
C3H/HeJ	ENSMUSG00175030188	pseudogene	Chr5:69572292-69573466 (-)
C57BL/6NJ	ENSMUSG00215006326	pseudogene	Chr5:68356878-68358050 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036873	pseudogene	Chr4:122264950-122266131 (-)
CAST/EiJ	ENSTCUG00005033575	pseudogene	Chr5:67321657-67322807 (-)
CBA/J	ENSMUSG00210023892	pseudogene	Chr5:68510484-68511658 (-)
DBA/2J	ENSMUSG00185005695	pseudogene	Chr5:70340111-70341286 (-)
FVB/NJ	ENSMUSG00205030070	pseudogene	Chr5:67318118-67319289 (-)
JF1/MsJ	ENSUMUG00000007378	pseudogene	Chr5:74821846-74823024 (-)
LP/J	ENSMUSG00230021859	pseudogene	Chr5:75015904-75017078 (-)
NOD/ShiLtJ	ENSMUSG00190004359	pseudogene	Chr5:67439006-67440180 (-)
NZO/HlLtJ	ENSMUSG00225010308	pseudogene	Chr5:80086087-80087259 (-)
PWK/PhJ	ENSLUMG00010014545	pseudogene	Chr5:67410442-67411600 (-)
SPRET/EiJ	ENSMSPG00010035998	pseudogene	Chr5:69385964-69387133 (-)
WSB/EiJ	ENSIUOG00005019305	pseudogene	Chr5:70302186-70303361 (-)

Homology

• Gene Tree
  Gm5297
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm5297
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000105124 (Evidence)
• NCBI Gene
  384275

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105124	Ensembl Gene Model | MGI Sequence Detail	1171	C57BL/6J
transcript	ENSMUST00000198555	Ensembl | MGI Sequence Detail	1171	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm5297:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51317	Chr5:72785280-72785285 (-)	88 bp